| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3911 |
|---|
| Symbol | dapF |
|---|
| ID | 5165653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | + |
|---|
| Start bp | 4560733 |
|---|
| End bp | 4561569 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640551393 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001232633 |
|---|
| Protein GI | 148265927 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000014608 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA CCAAAATGCA TGGCGCAGGC AACGACTATG TTTATGTGAA CTGTTTTTCC
GAGCGGGTGG ACAACCCGGC GGACGTGGCA ATCAAGGTGT CCAACCGCAA TTTCGGCATC
GGCTCCGACG GACTGATCCT CATCATGCCG TCCGACAAGG CGGATGTGCG GATGCGCATG
TTCAACTCCG ACGGCTCCGA ATCGGAAATG TGCGGAAACG GCATCCGTTG CGTGGCAAAA
TATGCGTACG ACCATGGCAT TGTCGGCAAA AAAGAGATCT CCGCCGAGAC AGGCGCAGGT
ATCTTGACCC TCCAACTCTT CACCAACGAG GCAAATAAGG TGGAAAAGGT CCGCGTCAAT
ATGGGCAGGC CCCGCCTCAC CCGCAGCGAA ATCCCCATGA CCGGAGAGGC TGGCGCAAAA
GTGATCAATG AGCCGCTCAA CATCCTTCAC ACCACATTCC ACATCACCTG CGCATCCATG
GGCAACCCCC ACTGCGTGAT CTTTGTCGAC GACGTGGAGA ACTTCCAGGT GGAAAAATAC
GGCCCTATCA TCGAGAACCA CGAGATATTT CCCCGCCGCA CCAACGTGGA ATTCGTCCAG
ATCATCTCCC GCACCGAAGT GCGCCAGCGC ACCTGGGAAC GGGGCGCCGG CGAGACGCTC
GCCTGCGGTA CCGGCGCCAG CGCCGTCTGC GTGGCCGGCG CACTCAACGG ACTGACGGAG
AAGAAGATCC TCAACCACCT CTCAGGCGGC GACCTGGAGC TGGAATGGGC CGAAGACGGC
TTCCTCTACA TGACCGGCCC GGCGGTGGAA GTGTTCAGCG GAGAGATCGA GATTTAA
|
|---|
| Protein sequence | MKFTKMHGAG NDYVYVNCFS ERVDNPADVA IKVSNRNFGI GSDGLILIMP SDKADVRMRM
FNSDGSESEM CGNGIRCVAK YAYDHGIVGK KEISAETGAG ILTLQLFTNE ANKVEKVRVN
MGRPRLTRSE IPMTGEAGAK VINEPLNILH TTFHITCASM GNPHCVIFVD DVENFQVEKY
GPIIENHEIF PRRTNVEFVQ IISRTEVRQR TWERGAGETL ACGTGASAVC VAGALNGLTE
KKILNHLSGG DLELEWAEDG FLYMTGPAVE VFSGEIEI
|
|---|
| |