| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3452 |
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| Symbol | |
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| ID | 5162916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | - |
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| Start bp | 4059086 |
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| End bp | 4060690 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640550939 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_001232181 |
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| Protein GI | 148265475 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTTAA AGGAATACGC ATCCAAACGG CGATTCGAGA AAACACCCGA ACCGAAACCG
GACGTTCCTC ACGAGGGGCG CCGTCTCGTG TTCGTCGTGC ACAAACACGC GGCCCGGGCC
CTTCATTATG ATCTCAGGCT GGAGCTGGAA GGGGTTCTGA AAAGCTGGGC CGTGCCGAAG
GGACCCTCGC TGGATCCTTC CGTAAAAAGG CTGGCCGTTA TGGTTGAAGA CCATCCGCTC
GATTACAGGG ATTTCGAGGG GGTTATCCCG GAGGGTAATT ACGGCGCAGG AAGCGTTATC
ATCTGGGACC GGGGTTTCTA TCGTCACCCC TCTGCAGGAG ATGAGAACGA AAACGAGAAA
CTTCTTCTGG ACGGATTAAG AAAAGGGGAT ATGAAGTTTG TCCTCGAAGG GGAAAAACTT
CGGGGTGAAT TCGCGCTGGT CAGGATGGGA AAGGACGGGA AGTCGTGGCT GCTCCTGAAG
AAAAAAGACC GCTATGCAAG CAAGGGGGAA ATTCTCCAGG AGAACCGTTC CGTCGTGTCC
CATAAAACCC TGGAGGAGAT GCTCGAAGCC GGCGGCCAGA AATCTTTCAA ACAAAAAAAA
ATAAATCAGA TCCGGCTTCA CGAAGCGAAG GAAAGCGAAG AGCTGCATGA TGCGCCGGTT
AAACCGATGC CGCACAACAT AAAACCGATG CTCGCGACCC TGGCCAGGGA ACCGTTCGAC
CATCCGGACT GGGTCTTCGA AGTGAAATGG GACGGGTACC GGGCCATCGC AGAGATGCGG
GACGGAGACG TCGCGCTCTA TTCCCGAAAC CTGCTCTCGT TGCAACAAAA GTTTTCTCCC
ATCGCGGACG CGTTGCGGGA ATGCAGATTC GATGCGGTTC TGGACGGCGA AATCGTCGTC
GTGGATGATC GGGGACATCC CGATTTCCAG TTGCTGCAGA ATTACCAGAA GTCTGGAAAC
GGCCATCTTC TTTACTACGT CTTCGACCTC CTCTACTTCC AGGGACATGA TCTGACCGGC
CTCCCCCTGC TCAGGAGGAA AGAGATCCTG AAAAAAATCC TCCCTTCAGC CCCGAAAATA
AAATACAGCG ATCACGTATG GAAAGATGGG GTCCTGTTTT TCACCGTCGT AAGAGAAAAG
GGACTGGAGG GGATCATCGC CAAACATGCG CAAAGCGCGT ACCAGATGGG GATAAGGAGC
CGGCAGTGGC TGAAGGTGAA GACGCGGCTC ACGCAGGAGG GGGTGATCGC CGGTTTCACG
GAACCGAGGG GTGGGAGAAA GTGTTTCGGC ACCCTCGTCC TGGGCGTGTT CCAAGGGGAC
GAGCTGATCT ACATCGGCCA TTCGGGAGGC GGATTCGGGG CGAAAGATCT GCAGGAAATC
CGCGCGAAAC TGGAGCCCCT GATCCGGAAG GAATGCCCTT TTAAAGTGCG GCCGGAGACC
AATACCCCGG CCACCTGGGT AAAGCCGGAG CTGGTCTGCG AGATTTCCTT ATCCGGCTGG
ACTGAAGATG CCGTCATGAG ACACCCCGTT TTCCTGCGGC TGCGCGAGGA CAAAACCGCC
CGCGAAGTGG TGCGCGACAG CGGCGGCGAA GGAGGTAACC TATGA
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| Protein sequence | MGLKEYASKR RFEKTPEPKP DVPHEGRRLV FVVHKHAARA LHYDLRLELE GVLKSWAVPK
GPSLDPSVKR LAVMVEDHPL DYRDFEGVIP EGNYGAGSVI IWDRGFYRHP SAGDENENEK
LLLDGLRKGD MKFVLEGEKL RGEFALVRMG KDGKSWLLLK KKDRYASKGE ILQENRSVVS
HKTLEEMLEA GGQKSFKQKK INQIRLHEAK ESEELHDAPV KPMPHNIKPM LATLAREPFD
HPDWVFEVKW DGYRAIAEMR DGDVALYSRN LLSLQQKFSP IADALRECRF DAVLDGEIVV
VDDRGHPDFQ LLQNYQKSGN GHLLYYVFDL LYFQGHDLTG LPLLRRKEIL KKILPSAPKI
KYSDHVWKDG VLFFTVVREK GLEGIIAKHA QSAYQMGIRS RQWLKVKTRL TQEGVIAGFT
EPRGGRKCFG TLVLGVFQGD ELIYIGHSGG GFGAKDLQEI RAKLEPLIRK ECPFKVRPET
NTPATWVKPE LVCEISLSGW TEDAVMRHPV FLRLREDKTA REVVRDSGGE GGNL
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