Gene Gura_2175 details

Gene Information

• Locus tag: Gura_2175
• ID: 5164004
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter uraniireducens Rf4
• Kingdom: Bacteria
• Replicon accession: NC_009483
• Strand: -
• Start bp: 2535062
• End bp: 2536924
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640549672
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001230935
• Protein GI: 148264229
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0116264
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATACAA TTGACGGGCC TGAGGCGTTG AAAAAGCTTT CGCTGAAGGA ACTGACCATC 
CTTGCCGGAG AGTTGCGCGA AACCATTATC GCCACCTGCG CGACCAACGG CGGGCATCTC 
GCTCCAAGTC TCGGCGTGGT GGAACTGACC ATTGCGCTGC ACCGGGTCTT TAATTCACCC 
AAAGACAAGA TCGTCTGGGA TGTGGGGCAC CAGGCCTATG CCCATAAGCT TTTGACCGGT 
CGCCGGGAGG CGTTTAAAAC CCTGCGCACC CTGGGAGGGA TCAGCGGATT TCCGAAGCGT 
GCAGAATCCC CCCACGACGC CTTTGACGTC GGGCATTCCT CCACCTCCAT CTCCGCGGCG 
CTCGGCATGG CCCTGGCCCG TGACCTGAAG CAGGAGCACA ACAAGGTCCT GGCCGTGATC 
GGCGACGGTT CCATGACCGG CGGTCTTGCC TATGAGGGAT TGAACCATGC CGGGCACCTG 
AACAAGGACC TGGTGGTAAT CCTCAACGAC AATGAGATGT CCATATCGGA AAACGTGGGG 
GCGCTCTCCA GTTTCCTCTC CCGCACCATA ACCAACGAAT TCGTCCACAA GATCAAGAAG 
GATGTGGAGG GGTTCCTGGA AAACCTCGAT GGGCTCGGAC GCGGCGTGCT CCAGGTCGCC 
AAGCGCGCTG AGGAGTCTCT CAAGGGTCTT TTCACGCCGG GCATGCTCTT CGAGGCCTTC 
GGCTTCGAGT ACGTTGGTCC CATCGACGGT CACAATGTCG AGCTTTTGAT GGAAACTCTG 
GAAAACGTCA AGCGTTTTGA CGATGCGGTG CTGATCCATG TCCTGACCAA GAAGGGAAAA 
GGGTATGCGC CTGCCGAGGC GAACCCGTCG CTGTTTCACG GGGTAGGCCC CTTTGACGTG 
GCAACCGGCA AGGTGCTGAA AGGAAAGGGC GGGGCTGCCT CATACACCTA TATATTTGGC 
GAGGCGATGA AAAAGATCGC TGAAGACAAC GACAAGGTTG TCGCCATAAC AGCAGCCATG 
CCGGACGGTA CAGGACTGTC CGGTTTCGCC GCCAAGTATC CTGAACGTTT CTTTGACGTG 
GGGATTGCCG AACAACACGG CGTCACGTTT GCTGCCGGCC TTGCCAGCCA AGGATTCAAG 
CCGGTCTTCG CCGTGTATTC TTCCTTCTTG CAGCGGGCCT ACGACCAGGT TTTCCACGAC 
GTCTGCCTGC AGAATCTCCC GGTGGTGTTT GCCATCGACC GGGCCGGGGT TGTGGGTAGC 
GATGGCCCGA CCCATCACGG CGTGTTCGAC CTGTCGTACC TCCGTCATCT CCCTGCCATG 
ACCCTGATGG CGCCCAAGGA TGAGAATGAG TTGCAGCACA TGCTCCAAAC CGCGATCAAC 
CATGACGGCC CGGCAGCTGT CCGCTACCCG CGCGGCAACG GCTATGGCGT GGCCATTGAC 
CAGATATGCA AGGATATCCC CATTGGTAAA GCGGAGCTTT TGCGCGATGG CATCGACGGC 
GCCGTCCTGG CGGTCGGTAC GATGGTCTAT CCCGCCCTTG AAGCCGCCGA AGCACTTGCC 
GGCGAAGGTC TAAACCTGGC GGTAATCAAT ATGCGCTTCA TTAAGCCGCT TGACAAGGAG 
ATGATCCTGT CCATGGCGGA GAAGACGGGA AGGCTCTTTA CCATTGAGGA AAACGTCCTG 
CAAGGGGGCT TCGGCACGGC AGTGCTGGAG CTTTTGGAAG GGGAAGGTTT AGATAATGTT 
GCGGTGACGC GCTTTGGTTT TCCCGATTGC TTTATCGAAC AGGGAGAGCA GCCGGAGTTG 
CGAGCCAGGT ACGGCCTCGA TGCTTCAGGG ATCGCCGCAC GTATCAGGGC GGCGCTACAT 
TAG 

 

Protein sequence

MNTIDGPEAL KKLSLKELTI LAGELRETII ATCATNGGHL APSLGVVELT IALHRVFNSP 
KDKIVWDVGH QAYAHKLLTG RREAFKTLRT LGGISGFPKR AESPHDAFDV GHSSTSISAA 
LGMALARDLK QEHNKVLAVI GDGSMTGGLA YEGLNHAGHL NKDLVVILND NEMSISENVG 
ALSSFLSRTI TNEFVHKIKK DVEGFLENLD GLGRGVLQVA KRAEESLKGL FTPGMLFEAF 
GFEYVGPIDG HNVELLMETL ENVKRFDDAV LIHVLTKKGK GYAPAEANPS LFHGVGPFDV 
ATGKVLKGKG GAASYTYIFG EAMKKIAEDN DKVVAITAAM PDGTGLSGFA AKYPERFFDV 
GIAEQHGVTF AAGLASQGFK PVFAVYSSFL QRAYDQVFHD VCLQNLPVVF AIDRAGVVGS 
DGPTHHGVFD LSYLRHLPAM TLMAPKDENE LQHMLQTAIN HDGPAAVRYP RGNGYGVAID 
QICKDIPIGK AELLRDGIDG AVLAVGTMVY PALEAAEALA GEGLNLAVIN MRFIKPLDKE 
MILSMAEKTG RLFTIEENVL QGGFGTAVLE LLEGEGLDNV AVTRFGFPDC FIEQGEQPEL 
RARYGLDASG IAARIRAALH