| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1718 |
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| Symbol | secD |
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| ID | 5166161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | + |
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| Start bp | 1993013 |
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| End bp | 1994614 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640549214 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001230486 |
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| Protein GI | 148263780 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGG GGTTTACCTG GCGTATCAGC CTGATTGTAG CGTTCCTTTT CATTTCATTC
CTGTACTTGA CACCGACCCT GGTTTCCCCG CTTCCTTCCT GGTGGAAAGG CTTTCTTCCC
AAGGATAAGA TCCATTTAGG GCTTGATTTA CAGGGCGGCA CCCATCTCGT TATGGAAGTC
GAGACCCAGA AGGCGGTTGA AGGTTCGCTG GATCTGATCT CCACCGATCT GGAAGATACC
CTCAATGCCC AGAATATCCG CTTCAAACGC GTCGCCAAGG TCGGCGGAGA TCGCGTTCAG
CTGGTGCTGT ACGACAGGGG TTCGGCCGAC AATGTCCAGA AGCTGGTGAA GAAAAAGTAC
CCGGACCTGG AACTGCTGCC GCTTTTCGAT GAAGGTGGCT TCGTCAACAT GCAGCTCCGA
ATCAACGAGA AAGAGGCACA GGTCAGGAAA GACAAGGCCG TCCAGCAGGC TCTGGAAACC
ATCCGCAACA GGATCGACCA GTTCGGCGTT TCTGAGCCGA TTATTCAGCG GGAAGGGATC
AGCCACATTG TCGTGCAGCT CCCCGGCATT AAGGACCCGA AACGTGCCAT TGAGTTGATC
GGGAAAACTG CCAGGCTTGA ATTCAAACTG GTGGACGAGA ATGTGAATGC TGTAACAGCC
ACTCCGTCAT CTATCCCCGA AGACGACGAA ATTCTTGTGG AAAAGAAGAC AGATCCGGCT
ACCGGCGCAG TTTCAGAGAC CCCTCTTGTT GTAAAAAGAA AGGCGATGAT AACCGGCGAC
CTCCTGACCG ATGCCCAGGT ACGCATCGAT TCACAGTACA ATCAGCCGTA TGTCGCCATT
GAGTTCAATT CCACCGGTGC CAGGCTGTTT GACCAGGTAA CGGCTGCCAA TGTGGGCAAA
CGGTTTGCCA TCGTTTTGGA CAACAACATC TATTCGGCGC CGGTGATTCG CGAGCGGATC
TCGGGTGGCA GTGCACAGAT ATCCGGTTCG TTCACCGAGA AGGAGGCGTC CGACCTGGGC
ATCGTACTGC GCGCCGGCTC CCTTCCCGCG CCGGTGAAGA TAATCCAGAA CGTTACCGTC
GGTCCTTCCC TCGGCCAGGA TTCCATCAAC AAAGGGCTCA TAGCCGGCCT GATCGGGGTT
GCCCTGGTGG TCGTCTTTAT GACTATCTAC TACAAACTGT CCGGTCTGGT CGCCAATTTC
GGCATGGTGC TCAACATCAT TTTCCTCATG GGTTCGCTTT CGGCCCTGGG GGCTACGCTG
ACCCTTCCCG GCATTGCAGC TATCGTCCTT CTGATCGGCA TGTCGGTTGA CTCCAACGTT
CTCATCTTTG AGCGAATCAG GGAGGAACTT CGGCTTGGCA AGACGCCGAT GGCTTCCATC
GACGCAGGAT ACGACAAGGC GTTCCTTACC ATTATGGACT CCCATGTGAC CACGCTGATA
ACAGCTGCGG TGCTTTTCCA GTTCGGTACT GGTCCTGTAA AGGGTTTTGC CGTATCGTTG
AGTCTTGGTA TCATCATCAA TCTATTCACC TCGCTTCTGG CTACCAGGGT GGTGTTCGAC
CTGTTCCTCG ATCGCGTCAG GGTGAAGAGA CTGAGTATAT AA
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| Protein sequence | MTKGFTWRIS LIVAFLFISF LYLTPTLVSP LPSWWKGFLP KDKIHLGLDL QGGTHLVMEV
ETQKAVEGSL DLISTDLEDT LNAQNIRFKR VAKVGGDRVQ LVLYDRGSAD NVQKLVKKKY
PDLELLPLFD EGGFVNMQLR INEKEAQVRK DKAVQQALET IRNRIDQFGV SEPIIQREGI
SHIVVQLPGI KDPKRAIELI GKTARLEFKL VDENVNAVTA TPSSIPEDDE ILVEKKTDPA
TGAVSETPLV VKRKAMITGD LLTDAQVRID SQYNQPYVAI EFNSTGARLF DQVTAANVGK
RFAIVLDNNI YSAPVIRERI SGGSAQISGS FTEKEASDLG IVLRAGSLPA PVKIIQNVTV
GPSLGQDSIN KGLIAGLIGV ALVVVFMTIY YKLSGLVANF GMVLNIIFLM GSLSALGATL
TLPGIAAIVL LIGMSVDSNV LIFERIREEL RLGKTPMASI DAGYDKAFLT IMDSHVTTLI
TAAVLFQFGT GPVKGFAVSL SLGIIINLFT SLLATRVVFD LFLDRVRVKR LSI
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