| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1472 |
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| Symbol | |
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| ID | 5165794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | + |
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| Start bp | 1705430 |
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| End bp | 1710232 |
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| Gene Length | 4803 bp |
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| Protein Length | 1600 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640548972 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001230244 |
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| Protein GI | 148263538 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.059879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTTT TTAATAAGTT AATCAAATAT TACTTTTTAT GCCTTGCAAT ACTGATTATT
CATTTCCTTC TTTTTAATGA GAATGCTTTT GGTAACACAT ATCTGACTAA TGTCAAAATA
TTCGGTGGTA ATGCACATTA CTATCAAAAA ACCACTTCAA ATGCAGTTCC AGATCCGGCT
TCTCATGGTA GTGAATATGT GGGTAGTTGT AATATAGGAT CCTTAATTTG GTTTACTGAA
TATACAGGTG AATATGATAA AAAAATAGAT GTATCTGTCA GTGGTGGAAA TTTTAGCAGA
TGTACATTTA TTAATAGCTC TGGCGCGATT ACGTTCACAG ATGATGGATG TGTATCATGT
ACAGAACCCA AATCCTCTGA GTCTTCTGGT GGTTGCACAA ATTATAATGA AGAAAACTTC
CAAATGACTT TGATGGCAGG TTATTTTGCA AAAGAATATA ATTGTGACCG TTCTATTTAT
CCGTGCGAGA GATCATCCGG TCCATGTGGT TTTGAAACTA ACGAGGCAAG TAGTTCTTTC
GATTTGCTCC TTAGTTGTGA TGGTGATATG CAGTTTGATA AGATTATAAT AAGCGGTCAT
AACGCTGCGT GGGACAGTAA TATGGTTCCT GGTAGCTTAT TTTTAATAAA TGGTATAAGT
CCAACAACAT CAAGTGGTAG TTTAACTTGG GAAATTCCAT TTGATGGTAA ATGTGGCGAC
AGAATCACTA TGACATCATC TGTACCCTAT AGCTATGGTG CTATTGAAGT AGACTCTATT
AGCGCAATCC CCATATTTTG TGATATCAAA ATCGACAATC TCTCTACCAC AAAGGCTACA
ATAGATCCGA ATGCAGGCGA AACGACAATA TTTTATGGTA GTATCTCATC TTCTAAGAGT
TACACCTGGA TATTGAGCGT CGGCGGAAAA ACTGTAAACG GCAGCGGAAA TCCTTCAGTA
GTGTGGGATG GGAAAGATTC CACAGGAAAC ATTGTAGCTG ACGGGATGTA TACAGCTACC
CTTACTGCTA TGACTACGGA TGGTAAATGC TCAGATTCCG CTACAACCCA GGTTGAAGTG
AAAAAGGGGC CTGAGCAATG TAACCTGGAT CATGACTTTC AATCCAGGGT TAACGTTACA
ACCGGTTGGC TCTCCCACAG TCAGGACCTT TTCTCCCTCA AGGGAGGGAG CCTTTCAACA
AGTATTTCAC TTGCCTACAA CAGCCTCGCC CCCCGAACCG GTCCTATCGA CACGGATATA
ATCCATCATT TCCAGAAGGC CCTTCATGTT AGAGACGACG GCTCGATTCT CTACCGGGAG
TGGGACCAGA CTCTGGTCTA CACCTTCTCT GATACAGGCT ACCAGCCGCC GTCCGGCGAC
ACCTCGACAC TGGTGAAGAA CGTCGACGGT AGCTATGTCC TCACCGATGT CGACGGAACG
GTCAACAATT TTAACCAGAA TGGGAAAATC AGCGCCACCG TCGAGCCGAG CGGCAAGACC
TATGGCTTTG CCTATACCGC CGACTCCGTC ACCGTGACCG ATCCGTACAA CAAGAGCACC
ATATTCTCCA TCCTTTACTA CAACAGCATC AATCCCATGA CCGGGACGCT CGGCACCGGC
TGGAGCCACA ACTACGAGAT CGCCCTCCAG GACCAGGGAA ACGGGGCGAT ACTGTTCAAG
GACGGCCAGT TGTCGCGTCT CTACACACGC TCAGGGGATA CCTATGTGTC ACCGCCAGGC
GACTATTCAA CCCTGGTGAA GAATACCGAC GGCACCTTTG TCATTACTGA GAAAGACGGC
CTCAACCATA ACTTTGACCA GTGGGGAAGG ATTCTTTCCC GTCTTGACAA AAACGGCACC
GCAATGACCT TTGCCTATGA CGGCGGCAAC CTGAGCGGCG TTACCGATGG CGCAGGGCGA
ACTGTCACAT TTGCTTACGA CGGGACCAAC AAGCTCTTGT CAGTCACCGA CCCGAAGGGG
AACGCTTATA CTTTCGGCTA TGACGGCGGC AATCTCATTA CCGTCACCAA TCCCGACAGC
GGTCAGTGGA GCTATACGTA TGACCCAGCC GGCTTCCTTC TCACCAAGGC TGACCCAGGC
GGTAATGTGG TCACATACGT ATACGACGAC ACCCACCGGG TCATTAGCGG GACTGATCCT
GAGGGGCGGA GCCGCGACCT CGACTATGCG GCGTCCGTCC CCGGTTCCGA TACTGCGAAG
ACCACGACCT TCAAGGAGAA GGACGGAGGG GAGTGGCAGT ACACCTATGA CACCTCCGCC
GGGACACTGA CGAGCAAGAC TGACCCGTTG GGGAATACCA CCAGCTTTAC CTACGACAGC
CGCAAGAAAA TGCTCACAAA GACCGAGCCG GTAATCGGAA CAACCACGTA TAGCTACGAT
GCGAACGACT ATATGACCTC CCTCACAGAC CCGCTCAGCA ATACCACGAG CTACACCTAC
AACAGCCGAG GCCAAGTGCT GACCGTCTCC GGGCCTGCGG GAACGACGAC CAACACCTAT
GACGCTAACG GCAACCTCCT CACAGTCACC GACCCGGCAA GGGCGACCAC GACCTATGAG
TATGACCCTA AAGGGAACGT GACGAAAATC ACCGACGCCA AAGGGAAGGC GACCACCTTT
GTCTATGACG CAAGCGGCAT GCTTACTTCC ACCACCGACC AGACCGGCGC GACGACGACT
TACACCCATG ATGCTAACGG CAGCATGGCG ACCAGTACCG ACACTACCGG CAAGGTGACC
ACGTTCACCT ACGACGGGAT GAACCGGCTT GCCACCGTCA CCGACCCGCT CGGGCACGTC
ACCACCTACG ACTACGACAA AATTGGGAAC CGGACCTCCG TTACCGACGC CAATGGTAAC
ACGACAACGT ACAAGTACAA CTACCGCGGG CAGGTAATAG AGGCGAAGGA TGCGCAGGGG
AGCACCACCA CTTACACCTA CGGCGCCACC GGCTGCACGA GCTGCGGCGG CGGGGTGGAC
AAACTAACGG CGCTGACCGA CGCCAAGGGG CAGACGACGA GCTGGCAGTA TGACCTTCTC
GGGCACCTCG CGAGCGAAAC CGACCCCCTG CAGAAGGTGA CCGCCTACAT GTACGACCCG
GCGGGGAGGA TGAACCTGAA GACCGACGCC AATGGCGCGG CCGTTGCTTA CGGTTACGAT
CCCCTGCGGC GGCTGACCGG CAAGACCTAC CCTGACGGAA GCAGCCTGAG CTACACCTAC
GACACCGCTG GACACGTCCA GACCGCGGCG AACAGCAATG TTACATACAT TTACGCCTAC
GACGCTGCTG GGCGGGCGAC GAGCGTCACC GATTCCCGCG GCTACACGCT TGCCTATGAA
TACGACCTCC TTGGCAATCG GACGAAGATG AAATTCCAGC CGGGGACAGC CGACGAACGC
ATCACCACCT ATGCATACGA CGACGGCAAC CGCCTGACCG ACATCATCGC TCCGGCCGGT
ACCTTTACTT ACGGTTATGA TGCGCTTGGG AGAAGGACGA GCCTCGGCTA CCCAAATCAG
GTGACCGCAG CCTACACCTA TGATGATGCG GGACGGCTGA CGAGCCTTAG CCATACGGCT
GGCGGCTCTA CCATTGCGGC GTTCAGCTAT GCCCTGGATA ACGTGGGGAA CCGGACGAGC
AAGGCGACGA CCGAGGCGGA GAATTATCTG TACGATGTCG TCTACCGGTT GTTGAACGCC
GCCTCTCCCA AACCGGAGAC CTTCACCTAC GATGCCGTGG GGAACCGACA GACGGGACCG
GGAGCGAAGG ATACCGGCTA TCTTCACAAT GCCGGCAACC AGATGACCCA GGGGCGGAAG
CTCGCCTACG GCTACGACAA CAACGGCAAC CAGACCAACC GGGCCGTTCC CGGAGCGTTT
GACAAAAGCT GGACTCAGAC GTGGGACAAC GAGAACCGGC TGGTGAAGGT GGAGAAGGTG
AAGGGAGCGG AGAAGCGGAC GGTGAGCTTC AGCTACGACC CCTTCGGGCG GCGGATCGTC
AAGCAGATGA CCGTCGTGAA GGATGGCGTA ACGAAGACGA GCAGTTCGAG CTACGTCTAC
GACAACGACA ACATCGCGCT GGAGGTCTAC ACGGACGAGA CCGGCGCGGT GACGAAAACC
TTCTACACCC ACGGAGCCGG CATCGACGAG CATTTGGCAT TGGAGCACGG CGGCCAGTTC
TATTACTACC ACGCCGACGG CCTCGGGAGT ATCGTGAGCA TCACCGACGC GAACAGGAAT
GTGGTGCAAA GCTACGAGTA CGACTCCTTC GGGATGGTGA AGCCATCCAC CGTCTTTGCC
AACAGCTACA CCTACACGGG AAGGGAGTGG GATAAGGAGA CGGGGCTCTA CTTCTACCGC
GCTCGGTACT ATGATCCGAT GGAAGGACGC TTCATCAGCA AGGACCCCGT AGGATTTAAA
GGTGGAATCA ACATCTACGC TTACGTTTCC AATAACGTAG TTAATGATAC TGATCCATCG
GGGCTTTATC CCGGCCCATG TGGGAATGAT AGCCATCAGT GGGTTCCTGA TAGTCCTTGG
GGATTTTGTG ATTTTTCAGG TCCATGCCAA AGACATGATG ATTGTTATGG ATGTTCAGGT
AAGCGACAAG GCAAAACTAA ATCTCAGTGT GATCGGGATT TTCTAAATAA TATGCTGAAC
ACCTGTAAGG GGTTGCAAGG TAAAGCCTAT ACTACGTGTG TAGGGGCTGC ATATGTTTAC
TATGTTGCAG TATCTAGGGG AGGTGACAAA GACTTCGATA ATGCCAGAAA ATGTTGCCAG
TAG
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| Protein sequence | MIFFNKLIKY YFLCLAILII HFLLFNENAF GNTYLTNVKI FGGNAHYYQK TTSNAVPDPA
SHGSEYVGSC NIGSLIWFTE YTGEYDKKID VSVSGGNFSR CTFINSSGAI TFTDDGCVSC
TEPKSSESSG GCTNYNEENF QMTLMAGYFA KEYNCDRSIY PCERSSGPCG FETNEASSSF
DLLLSCDGDM QFDKIIISGH NAAWDSNMVP GSLFLINGIS PTTSSGSLTW EIPFDGKCGD
RITMTSSVPY SYGAIEVDSI SAIPIFCDIK IDNLSTTKAT IDPNAGETTI FYGSISSSKS
YTWILSVGGK TVNGSGNPSV VWDGKDSTGN IVADGMYTAT LTAMTTDGKC SDSATTQVEV
KKGPEQCNLD HDFQSRVNVT TGWLSHSQDL FSLKGGSLST SISLAYNSLA PRTGPIDTDI
IHHFQKALHV RDDGSILYRE WDQTLVYTFS DTGYQPPSGD TSTLVKNVDG SYVLTDVDGT
VNNFNQNGKI SATVEPSGKT YGFAYTADSV TVTDPYNKST IFSILYYNSI NPMTGTLGTG
WSHNYEIALQ DQGNGAILFK DGQLSRLYTR SGDTYVSPPG DYSTLVKNTD GTFVITEKDG
LNHNFDQWGR ILSRLDKNGT AMTFAYDGGN LSGVTDGAGR TVTFAYDGTN KLLSVTDPKG
NAYTFGYDGG NLITVTNPDS GQWSYTYDPA GFLLTKADPG GNVVTYVYDD THRVISGTDP
EGRSRDLDYA ASVPGSDTAK TTTFKEKDGG EWQYTYDTSA GTLTSKTDPL GNTTSFTYDS
RKKMLTKTEP VIGTTTYSYD ANDYMTSLTD PLSNTTSYTY NSRGQVLTVS GPAGTTTNTY
DANGNLLTVT DPARATTTYE YDPKGNVTKI TDAKGKATTF VYDASGMLTS TTDQTGATTT
YTHDANGSMA TSTDTTGKVT TFTYDGMNRL ATVTDPLGHV TTYDYDKIGN RTSVTDANGN
TTTYKYNYRG QVIEAKDAQG STTTYTYGAT GCTSCGGGVD KLTALTDAKG QTTSWQYDLL
GHLASETDPL QKVTAYMYDP AGRMNLKTDA NGAAVAYGYD PLRRLTGKTY PDGSSLSYTY
DTAGHVQTAA NSNVTYIYAY DAAGRATSVT DSRGYTLAYE YDLLGNRTKM KFQPGTADER
ITTYAYDDGN RLTDIIAPAG TFTYGYDALG RRTSLGYPNQ VTAAYTYDDA GRLTSLSHTA
GGSTIAAFSY ALDNVGNRTS KATTEAENYL YDVVYRLLNA ASPKPETFTY DAVGNRQTGP
GAKDTGYLHN AGNQMTQGRK LAYGYDNNGN QTNRAVPGAF DKSWTQTWDN ENRLVKVEKV
KGAEKRTVSF SYDPFGRRIV KQMTVVKDGV TKTSSSSYVY DNDNIALEVY TDETGAVTKT
FYTHGAGIDE HLALEHGGQF YYYHADGLGS IVSITDANRN VVQSYEYDSF GMVKPSTVFA
NSYTYTGREW DKETGLYFYR ARYYDPMEGR FISKDPVGFK GGINIYAYVS NNVVNDTDPS
GLYPGPCGND SHQWVPDSPW GFCDFSGPCQ RHDDCYGCSG KRQGKTKSQC DRDFLNNMLN
TCKGLQGKAY TTCVGAAYVY YVAVSRGGDK DFDNARKCCQ
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