| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_0140 |
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| Symbol | |
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| ID | 5167089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | + |
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| Start bp | 192799 |
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| End bp | 196278 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640547639 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001228929 |
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| Protein GI | 148262223 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00133746 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCTA TCCTTACTCC TAATATAAAC CAGCTTGTCT CTGCCCTTTC CACTGCCGAG
GCCTCTATCT CCATTGCCGG CCTCAAGGGC TCAGCACCGG CCTATGTCCT GTCGCGATTA
CTGGTCGGGG TGAAAAAGAA CTTTCTTATC ATCACGTCAG ATGCAGAAAG CGCCGAAGAA
CTGTGCCGCG AATTGCGCTT TTACAGCGGC CGGGAAGACG CCGTCCTGTA TTTCCCACCA
TGGGACACCG CACCTTTTGA AAGCGCATCT CCCCATGCGG ACATTACCGG CCAGCGGCTG
AATGTGTTGT TCCGGCTGAT GGACGGCAGG GCGGACGCGG TGGTGACATC ACTGCCGGCC
GTGATGCAAA AGCTCCTGCC GCGCAAGACC CTTGGGGAGA TTTCCCAGTA CATCGTTGCC
GGTGAAGAGG TGGCGCGGGA GAAACTGCTG GAAAAGCTGG TGAAGCTCGG TTATTCGCAC
GTACCACTGG TGGAGGATCG GGGCGGCTTT TCCATTCGCG GCGGCATCCT CGACATCTTT
CCCCCTGACC TGCCGGCGCC GGTCAGAATC GAGTTCTTCG GCGATTTTGT CGATACCATC
CGCACCTTCG ACCCTGCCAC GCAACGCTCC CTTCAGCCAT TGGAAGAGCT GGTTCTCCTC
CCTTCGCGGG AGGTGGTGAT CTCTGAGGAG GTCTTGAAGG AGTTCCCCCC GCGCCTGAAA
AAACGCTGCG ATGCTATTGA GATTCCGGCG ACCCGCCGTC GGGACCTGCT GGAGCAGCTG
CAGAACGCCA TATACCCGCC GGGGGTGGAA TACCTCCAGC CCCTGTTCCA TCCAGGACTT
GAGACCCTTT TCGATTACGC CGGCAAAGAG CTGGTCAAGG TGATCTATGA CCCCGCAGCC
ATGGCCGCTG CCCGGGAGCG CTTCATCGAA GAGCTGTCTG CTGCAGAGCA GAGGGCATTC
GAGCGGGACG TCATCAGCTG CGAAACAGCA GAATTGTTTC TCGATGCAGA TAGCATAACG
AAGATTCTTT CAGAGGGTCG TCGACTGGCG ATTCCTTTTC TGGAGGTGCG CGGCACCGGC
GAGATCGGAG AAACCTTCCG CCTTGCGGTG CAGGATAACA GCGATCTCAA ACTTGAGGTC
TCCAGCGATG GCGAGGGGGT GCTGAAACCC CTGGTGGAAA AGGTCCTCTC CTGGCTTGCG
GCGAAGAACC AGGTGCTCAT GGCCTGTCAC CAGCGTGGTC AGGCCCAACG GCTCTATGAA
ATCCTTTCCC ATTACGATCT CCCTCTCAAC ATCTCCGAGC GCGAGTTTCC GGCGGAGCTG
GGGCGTAAAG ACAACCGGCT CGATATTCTT GTGGGAGACA TTTCCCGCGG TTTCCGCCTC
CCGGAAGAGG GGTTGGTTGT CATTGCCGAG GAAGAGATCT TTGGCGTCAG GGTCAAGCGA
CGCGGCCTTT CCGAGGCCCG GAAAAAACAG CTGCTCACCT CCCTCGCCGA ACTGAAGCCT
GGCGACTACA TGGTGCATAT CGACTTCGGC GTCGGCATTT ACCGCGGTCT GCAGCATCTG
ACCTTCGATC GGATGGAGGG GGATTTTCTC CTCCTGGAAT ACGCCGGTGC GGACAAGCTC
TACCTGCCCG TCGATCGGAT CAACCTTGTT CAGCGCTATG TGGGTGCCGA AGGGGTCGAG
CCCCATGTGG ACAAGCTGGG AGGCGCCGGC TGGGAGAAGA CCAAGGCCCG GGCCCGGGCC
GCCATTCAGG AGATGGCGGG GGAACTGCTG AAGATTTACG CTGCGCGGCA GGTGGAGGAA
GGGCATGCCT TCTCTCCCCA GGACGAACTC TACCAGGAAT TCGAGGCATC CTTTGCCTTC
GAGGAGACAC CGGACCAGCA GGCGGCGATC GAAGACGTGC TGCACGATAT GGAGAGCAAG
AGGCCGATGG ATCGCCTCGT CTGCGGCGAT GTGGGGTACG GCAAGACCGA AGTGGCCATG
CGCGGCGCCT TCAAGGCGGT GATGGACGGC AAGCAGGTGG CGCTTCTGGT CCCGACGACG
ATTCTTGCCC AGCAGCACAT GGAGACCTTT GCCGAGCGTT TCAAGGCGTA TCCGGTCAAG
GTGGAGATGC TCTCCCGTTT CCGCTCGGCC AAGGAACAGA AGGCGATCCT CGAAGGGGTA
AAAAAGGGGG AGGTCGACAT CATCATCGGC ACCCATCGCC TGTTGCAGAA GGATGTGGTC
TTCAAGGACC TGGGCCTTCT CATCATCGAC GAAGAGCAGC GCTTCGGCGT GTCGCACAAG
GAACGGCTGA AGCAATTCCG GGCTGTGGTG GACATCATGA CGCTCACCGC CACCCCGATC
CCGCGTACCC TGTACATGTC GCTGATGGGG ATCCGCGACC TCTCCATCAT CGATACCCCG
CCGGTCGATC GTCTCGCTAT CAAGACCTTC GTGGCGCGCT CTTCCGATGA GCTGATCCGC
GAGGCAGTGC TGCGGGAGTT GCGCCGGGGC GGGCAGGTGT TCTTCGTCCA TAACCGGGTG
CAGACCATCG GTGCCATGGC GGAGCATTTG CAGCAGATCG TCCCCGAGGC GCGCATTGCC
GTGGGGCACG GCCAGATGGA CGAAAAGGAG CTGGAACGGG TGATGCTCGG CTTTATGCAT
GGCGAAACCA ACTTGCTCCT CTGCACCACC ATCATCGAGT CGGGGCTCGA CATCCCGACT
GCCAACACTC TGATCGTCAG CCGGGCCGAT ACTTTCGGTC TGTCCCAGCT CTACCAGTTG
CGCGGCCGGG TGGGACGCTC CAAGCAGCGC GCCTACGCCT ATCTGCTCAT CCCAGGCGAA
GGGGCCATCT CGGCCGATGC GCGGGAGAGG CTCAAGATCA TCCAGGAGCT TACCGAACTG
GGCGCCGGCT TTCGCATCGC CACCCACGAC CTGGAGATCC GGGGCGCCGG TGATCTTCTC
GGGGCGCGGC AGTCCGGGGA TATCGCCGCG GTAGGTTTTG AACTCTATAC GGAACTTCTT
GAAGAGGCGA TCAGGCAGCT GAAGGGCGAG GAACTGGCCG AGCGGGTCGA GCCGGAGATC
AAGCTGCGCA TCCCGGCGTT TGTCCCGGAG GATTATGTCC GCGAACCGAA CCAGCGGCTC
ATTATCTACA AAAAGCTTTC CCAGGCGACA TCGGAGGAAG ATATCGGGGA AATCATGGCG
GAGCTGGTCG ACCGCTTCGG CAAGTTGCCG CTGGCGGCTA CCTATCTCCT GGAAGTGATG
CGGCTGCGCG TCACCCTGAA AGCCATGCTG GTCAAGGAGA TCGAGTTCGA TGGTAAACGG
CTTGTCCTCT CTTTCCATCA GAAGACCCCC GTTCCACCCG ATACCATCAT CGCCCTGATC
CGGCAACAGC CGAAAAAATA CCAGTTCACG CCCGACTTCC GCCTCTATGC CGAGCTGGCT
GATACCTCGT TTGACGGCAT TCTCGGCGAG GCCAGAAATC TCTTGAAAAG GCTAGGCTGA
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| Protein sequence | MTAILTPNIN QLVSALSTAE ASISIAGLKG SAPAYVLSRL LVGVKKNFLI ITSDAESAEE
LCRELRFYSG REDAVLYFPP WDTAPFESAS PHADITGQRL NVLFRLMDGR ADAVVTSLPA
VMQKLLPRKT LGEISQYIVA GEEVAREKLL EKLVKLGYSH VPLVEDRGGF SIRGGILDIF
PPDLPAPVRI EFFGDFVDTI RTFDPATQRS LQPLEELVLL PSREVVISEE VLKEFPPRLK
KRCDAIEIPA TRRRDLLEQL QNAIYPPGVE YLQPLFHPGL ETLFDYAGKE LVKVIYDPAA
MAAARERFIE ELSAAEQRAF ERDVISCETA ELFLDADSIT KILSEGRRLA IPFLEVRGTG
EIGETFRLAV QDNSDLKLEV SSDGEGVLKP LVEKVLSWLA AKNQVLMACH QRGQAQRLYE
ILSHYDLPLN ISEREFPAEL GRKDNRLDIL VGDISRGFRL PEEGLVVIAE EEIFGVRVKR
RGLSEARKKQ LLTSLAELKP GDYMVHIDFG VGIYRGLQHL TFDRMEGDFL LLEYAGADKL
YLPVDRINLV QRYVGAEGVE PHVDKLGGAG WEKTKARARA AIQEMAGELL KIYAARQVEE
GHAFSPQDEL YQEFEASFAF EETPDQQAAI EDVLHDMESK RPMDRLVCGD VGYGKTEVAM
RGAFKAVMDG KQVALLVPTT ILAQQHMETF AERFKAYPVK VEMLSRFRSA KEQKAILEGV
KKGEVDIIIG THRLLQKDVV FKDLGLLIID EEQRFGVSHK ERLKQFRAVV DIMTLTATPI
PRTLYMSLMG IRDLSIIDTP PVDRLAIKTF VARSSDELIR EAVLRELRRG GQVFFVHNRV
QTIGAMAEHL QQIVPEARIA VGHGQMDEKE LERVMLGFMH GETNLLLCTT IIESGLDIPT
ANTLIVSRAD TFGLSQLYQL RGRVGRSKQR AYAYLLIPGE GAISADARER LKIIQELTEL
GAGFRIATHD LEIRGAGDLL GARQSGDIAA VGFELYTELL EEAIRQLKGE ELAERVEPEI
KLRIPAFVPE DYVREPNQRL IIYKKLSQAT SEEDIGEIMA ELVDRFGKLP LAATYLLEVM
RLRVTLKAML VKEIEFDGKR LVLSFHQKTP VPPDTIIALI RQQPKKYQFT PDFRLYAELA
DTSFDGILGE ARNLLKRLG
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