Gene Gura_0118 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGura_0118 
Symbol 
ID5163757 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter uraniireducens Rf4 
KingdomBacteria 
Replicon accessionNC_009483 
Strand
Start bp159658 
End bp161433 
Gene Length1776 bp 
Protein Length591 aa 
Translation table11 
GC content57% 
IMG OID640547616 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_001228907 
Protein GI148262201 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTTTA ATACCGATCC GACGTTATTC ATCAATTCGC CGCTGAGCAA TGCGCCGCTC 
AATTCCGACG ATTTCTATCA GGCGCTGGTA AACGCCATGG GAGTTGGGGT TCTGGCCGTC
AACACCTCCG GCATGACCAT TCTTGCCAAC AAGAGCGCCC GCGAGAATTT CGGCGCTTAT
CCCGGCATCC ACCTGAACGA CGTCCTGCCG GAACTTTGGC CGAAGGTCGT GCAGCGCCTC
AGAAAGCACA CCCACAGCAT TGAAGTGTCG GTACGGGGCG GGGAAGCGAA CTACCTGGTC
AGGGTAAGTC CGATCCTCCT GGATAAGGAG CAAGTCGGGG CCGTCTGCGT TTTTGTGGAA
AGTACGGGCC TGGAAGAAAT GGCGATGCAG ATGCAGACGT TTCAGGAGTT GACCAGTGAA
TTGGGCGCTA TAATCAACTC CTCTTCCGAC GGGCTCTGGA TCTGCGACTC GCAAGCCAAT
GTGCTCCGTA TAAATCCGGC GTCGGAGCGA ATCAACCATA TTAAGGCGGA GGACGTCGTC
GGCCACAATA TGCGTGACCT GGTGGCAGAA GGGGTTTTCG ACAAGTCGGC CACCCTTGAG
GTGCTCAGAA CCGGAAACGT TGCGAACATG CTGCAACAGC GGGAAGGACG CAAGCTGATC
CTGACCGGCA CCCCTGTTTT CGATACAGCC GGACGGCTGA TCAGGGTCGT GGTGAGCGAA
CGCGACATTA CCGAGATCGA TATCCTGCAA CGGGAGTTGG AGGAGCAGGA GGCCATGAAA
GACCAGTTCC GCCACCACAT GATCGAGAAG CAGCAGGTGG AGCTGGAGTC GCATCGGGTC
ATAGCCCGGA GCCCCGTCAT GCTCAAGGCG CTCCATCAGG CGATCAAGGT CAGTACCGTT
GACTCGTCGG TGCTGATTCT CGGCGAATCC GGCGTGGGAA AGGGGCTGAT CGCCGACCTG
ATCCACAAGA ATTCACTGCG GGCGAAAAAG CCGCTCATCA AGATCAACTG CGGCGCCATC
CCTGAATCCC TGATTGAATC CGAGCTGTTC GGCTACGAGA AAGGCGCCTT TACCGGCGCC
CAAGCCGGCG GCAAGCCGGG ATATTTCGAG CTGGCAGATG GGGGAACCCT CTTTCTTGAC
GAGATCGCCG AGCTCCCCCT CTCCTCGCAG GTCAAATTGC TCCGCTTCCT TGAAGACGGC
CGCATCACAC GTCTTGGCGG GACCAACGGA CGCACCGTTG ACGTCCGCAT TCTCGCGGCG
ACCCACCGCA ACCTGGAGGA GATGGTCAGC CAGGGGAAAT TCCGGCTTGA TCTCTATTAT
CGATTGAAAG TCATCCCCAT CTATGTCCCG TCTGTACGGG AGCGGAAAGA CTGCATACTG
CCTCTCATTC ACCATTACAT CGACTTTTTC GGGACGAAGA CCGGCATCAA GAAACGGCTT
ACCCGGGCCG CCTCGGACAT TTTGATGTCT TACCCTTATC CGGGCAACGT GCGCGAGCTC
ATGAACATCT GCGAGCGACT GGTTGTCATG TCCGAAATGG AATTGATCGA TCTCAAGGAC
CTTCCCGGCG ATATCGTCGC CCGCGTGGAG GAAACGGGCA AGGCATCCAT GGCTTGGCCT
GAAGAAATGA GCCTGCAACA GGCAATCGAC AGCGTAGAGC GAAACGTCCT TGCCCAGGCA
GTGGAGCGAT ACGGCAACCA ATGCAGGATG GCTGAGGTCT TGGGGGTGAA TCAATCCACC
ATCGCCCGCA AACTCAAGAA GTACGGCTTG ACCTGA
 
Protein sequence
MSFNTDPTLF INSPLSNAPL NSDDFYQALV NAMGVGVLAV NTSGMTILAN KSARENFGAY 
PGIHLNDVLP ELWPKVVQRL RKHTHSIEVS VRGGEANYLV RVSPILLDKE QVGAVCVFVE
STGLEEMAMQ MQTFQELTSE LGAIINSSSD GLWICDSQAN VLRINPASER INHIKAEDVV
GHNMRDLVAE GVFDKSATLE VLRTGNVANM LQQREGRKLI LTGTPVFDTA GRLIRVVVSE
RDITEIDILQ RELEEQEAMK DQFRHHMIEK QQVELESHRV IARSPVMLKA LHQAIKVSTV
DSSVLILGES GVGKGLIADL IHKNSLRAKK PLIKINCGAI PESLIESELF GYEKGAFTGA
QAGGKPGYFE LADGGTLFLD EIAELPLSSQ VKLLRFLEDG RITRLGGTNG RTVDVRILAA
THRNLEEMVS QGKFRLDLYY RLKVIPIYVP SVRERKDCIL PLIHHYIDFF GTKTGIKKRL
TRAASDILMS YPYPGNVREL MNICERLVVM SEMELIDLKD LPGDIVARVE ETGKASMAWP
EEMSLQQAID SVERNVLAQA VERYGNQCRM AEVLGVNQST IARKLKKYGL T