| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_p0259 |
|---|
| Symbol | traI |
|---|
| ID | 5148527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009475 |
|---|
| Strand | - |
|---|
| Start bp | 190679 |
|---|
| End bp | 191314 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640539136 |
|---|
| Product | autoinducer synthesis protein TraI (conjugation factor synthetase) |
|---|
| Protein accession | YP_001220569 |
|---|
| Protein GI | 148241068 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTCA TTGTGCGCAC CCGTACAGCG CTCTTGCACG ATCTTGACTT GGCAATGGGG
ATGCACCGTC TGCGAGGGCG CGTGTTCAAG GAGCGGCTCG ACTGGGACGT CTCTATCGCG
GGGGGATTGG AGATCGATCA GTACGACGCG CTCAAGCCGA CCTATCTCTT GCTGCTCGAG
CAGCGCGAGG TCGTCGGATG TGTTCGTCTG CTGCCGACCA CCGGGCGCAA CATGCTGGCA
GATACGTTCC CGGTGTTGCT GGATGGCCAC GCGGCACCAA ACGAATCCAG GATCTGGGAG
AGCTCGCGCT TTTGCGTTGA TACCGAACAG GTCGCGACGA CAGCTGAGAA CGGCTTGCGG
GAAGCAACGT TCCTGCTCTT TGCGGCAATG ATTGAATGGG GCCAGCAGCT TGACCTTCAG
GCAATCGCGA CCGTCACTGA TCTGCGCATG GAGCGCATCC TGCGCCGAGC TGGATGGCAG
CTCAACCGCC TTGGTCCACC TCGTCAAATC GGGGCGACCC AAGCTGTCGC CGGACTGCTG
CCGGTCACCG ACAACGCTCT CGGGGCAATC CGAGCGGCCG GGAAGATTTC GGGGCGTGCA
ATTGACGCGC AGTCAAGCCT TCCGCTCGCG GCATAG
|
|---|
| Protein sequence | MKVIVRTRTA LLHDLDLAMG MHRLRGRVFK ERLDWDVSIA GGLEIDQYDA LKPTYLLLLE
QREVVGCVRL LPTTGRNMLA DTFPVLLDGH AAPNESRIWE SSRFCVDTEQ VATTAENGLR
EATFLLFAAM IEWGQQLDLQ AIATVTDLRM ERILRRAGWQ LNRLGPPRQI GATQAVAGLL
PVTDNALGAI RAAGKISGRA IDAQSSLPLA A
|
|---|
| |