Gene VC0395_A2852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2852 
SymbolispB 
ID5135884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp3007298 
End bp3008344 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content47% 
IMG OID640534296 
Productoctaprenyl-diphosphate synthase 
Protein accessionYP_001218702 
Protein GI147674613 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.55591e-12 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTTA GTGTATTATG CAGCGATTCC AGAAGACTAA ATGCCTTACA CGCTCTTATT 
TCAGCCGGAT TTACGATGGA TTTTAAAGCT ATCCAAGCGC TTACTGCCAA TGACATGGCA
AAAGTGAACG AAACGATTCA CGCTCAACTC AATTCTGACG TTTCCCTAAT CAACCAACTT
GGTTTCTATA TCATCAGTGG TGGTGGGAAG CGTTTACGCC CATTGCTGGC GGTTTTATCC
GCCAAAGCGC TCGGTTATCA AGGGTCACAT CACACGACTG CTGCTGCGTT TATTGAATTC
ATTCATACGG CAACCCTGTT GCACGATGAT GTGGTCGATG AATCAGACTT GCGCCGCGGT
AAAGCAACCG CCAATGCCGC GTTTGGTAAT GCCGCCAGCG TATTAGTCGG TGATTTTATC
TACACTCGCT CGTTTCAGAT GATGACAGAA TTAGGATCAA TGAAGATCCT GAAACTGATG
AGTGATGCAG TAAACGTGAT CGCTGAAGGT GAAGTACAGC AATTAATGAA CTGTAACGAT
CCTGATACCA CCGAAGCCAG CTACATGCAG GTTATTTACT CCAAAACTGC ACGTCTGTTT
GAAGCGGCAA CCCAGATTGG CGCTATCCTG TGTGATGCTT CTCCTGAAGT CGAACTGGCG
ATGCAAAACT ACGGTAAATA CCTAGGCACA GCCTTCCAAC TGATTGATGA TGTGATGGAT
TACACTTCAG ATGGTGATGA GATGGGTAAA AACGTCGGTG ACGATCTGGC AGAAGGCAAA
CCTACCCTAC CACTGCTTTA TGCGATGCAG CACGGGAATC CTGAGCAAGC CGCGATGATC
CGTGAAGCCA TCGAGAAAGC CAATGGCATG TCGCGTCTTA ATGAGATTCT CGCAGCGATG
GAGCAAACCG GTTCTTTACA ATACACCATT GAAAAGGCGC TGCATGAAGC GGATAAAGCC
ATCGCTGAAC TTGCGATTTT GCCAGAAAGC GAATACAAAC AAGCCTTGAT CACGCTCGCC
CATATGGCGG TCAATCGCAG TAAATAG
 
Protein sequence
MIFSVLCSDS RRLNALHALI SAGFTMDFKA IQALTANDMA KVNETIHAQL NSDVSLINQL 
GFYIISGGGK RLRPLLAVLS AKALGYQGSH HTTAAAFIEF IHTATLLHDD VVDESDLRRG
KATANAAFGN AASVLVGDFI YTRSFQMMTE LGSMKILKLM SDAVNVIAEG EVQQLMNCND
PDTTEASYMQ VIYSKTARLF EAATQIGAIL CDASPEVELA MQNYGKYLGT AFQLIDDVMD
YTSDGDEMGK NVGDDLAEGK PTLPLLYAMQ HGNPEQAAMI REAIEKANGM SRLNEILAAM
EQTGSLQYTI EKALHEADKA IAELAILPES EYKQALITLA HMAVNRSK