| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2851 |
|---|
| Symbol | |
|---|
| ID | 5135793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 3005743 |
|---|
| End bp | 3007149 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640534295 |
|---|
| Product | arginine/ornithine antiporter |
|---|
| Protein accession | YP_001218701 |
|---|
| Protein GI | 147674911 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0000722534 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA AACTGGGTTT AGGCTCTCTC ACGGCGCTAG TGATTGGTTC AATGATTGGT
GCGGGCGTGT TTAGCTTGCC ACAAAATATG GCAGCGGTTG CCAGTCCACT GGCAGTGATG
ATCGGCTGGT CGATCACTGG GATCGGCATG ATCTTTCTTG CGCTCTCTTT TCAATATTTA
GCCGTCAATA AACCCCATGT GAACAGTGGT GTGTTTGGTT TTGCTCGTGA AGGTTTTGGT
GATTTTGCCG GATTTTGCTC GGCGTGGGGC TACTGGTTTA GTGCCATGGT CGCGAACGTC
TCTTATCTGG TGATTGTGTT CAGTACTTTA GGACTGTTGT TTGATACGCC TGATCAGATT
ATCTTTGGCT CAGGTAATAC TTGGTGGTCA ATTGGTGGCG CTTCTCTACT ATTGTGGGCT
GTTCACAGCT TAGTATTAAG AGGGGTGCAA ACCGCCGCGC TGATCAATCT CATCACCACT
ATGACTAAAA TGGTGCCTTT GCTACTTTTC ATTGTGTCTG CGATTGCGGC GTTCAACTGG
TCCACATTTA GCTTGGATTT CGCAGGGCTC CATCACATTT CAGGCGCTGA TCTGCTCGGT
CAGGTCAAAG CGACCATGTT GATCACGGTT TGGGTTTTTG TGGGGATTGA AGGTGCTGTG
GTGGTATCAA GCCGAGCACG TCAGCGTAAA GACATCGGTC GCGCGACCAT TCTTGGGTTA
CTCACGGCTC TGTCGATTTA TGTCTTAGTC ACGCTGTTGT CGATGGGCGT GATTCAAGTC
AATCAGTTGG CGCAATACCC GAATCCTTCT ATGGCGCAAG TGTTGACTAC GATTATTGGT
CCTTGGGGTA AGTACATTAT TGCGGTTGGG CTTTTGATCT CGGTTTGCGG TGCGTTTTTG
AGTTGGACGG TATTGGCTTC CGAAGCGCCT TTCCTTGCCG CCAAAGATAA GATGTTTCCC
CGCCATTTTG CCAAGCAGAA TCAAGCGGGA AGTCCAGTTA ATGCCTTGTT CTTAACCACA
CTCTGTATCC AAGTCTCCTT GATCTTGGTG CGCTATACTT CCAGCACTTA CGATAGCTTA
TTGATCTTTG CCTCAGAGAT GATTTTAGTG CCGTATTTTC TGGTGGGCGC TTTTACCCTT
AAGCTTGCTC TGGAGCAAAG AGATCGAGGG AAGTTGCTAT TGATTGGCTT TGGCGCAACG
GCTTATGGTC TATGGTTGCT GTATGCATCA GGTTTGCACT ATTTGATGCT CTCAACCCTG
TTGTATGTAC CGGGCTTCGC TTTCTATCTC AAAGCAAAGC GTGAGCAAGG TGTAAAAGCA
TTCTGCGGCC GAGAAATGGT CGGAGCCAGC ACCCTACTGC TGTTTGCCGT TGGGGCGGCA
GGCATGCTTT GGCAAGGCGC TTGGTAA
|
|---|
| Protein sequence | MDKKLGLGSL TALVIGSMIG AGVFSLPQNM AAVASPLAVM IGWSITGIGM IFLALSFQYL
AVNKPHVNSG VFGFAREGFG DFAGFCSAWG YWFSAMVANV SYLVIVFSTL GLLFDTPDQI
IFGSGNTWWS IGGASLLLWA VHSLVLRGVQ TAALINLITT MTKMVPLLLF IVSAIAAFNW
STFSLDFAGL HHISGADLLG QVKATMLITV WVFVGIEGAV VVSSRARQRK DIGRATILGL
LTALSIYVLV TLLSMGVIQV NQLAQYPNPS MAQVLTTIIG PWGKYIIAVG LLISVCGAFL
SWTVLASEAP FLAAKDKMFP RHFAKQNQAG SPVNALFLTT LCIQVSLILV RYTSSTYDSL
LIFASEMILV PYFLVGAFTL KLALEQRDRG KLLLIGFGAT AYGLWLLYAS GLHYLMLSTL
LYVPGFAFYL KAKREQGVKA FCGREMVGAS TLLLFAVGAA GMLWQGAW
|
|---|
| |