Gene VC0395_A2841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2841 
SymboltldD 
ID5136089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2993484 
End bp2994929 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content51% 
IMG OID640534285 
ProducttldD protein 
Protein accessionYP_001218691 
Protein GI147675411 
COG category[R] General function prediction only 
COG ID[COG0312] Predicted Zn-dependent proteases and their inactivated homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones60 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATGA ACCAAATTGA AACGGCACTG CTGGCACCCG CTGGGCTCAC TGAACAGGAT 
ATTGCCGATA CGCTGTCCAG TATTGCGACT CGCCAGATTG ATTATGCCGA TATTTATTTC
CAATCCAGCT GGCATGAATC TCTAGTGCTG GAAGACAGCA TCATTAAAGA CGGCTCATTC
AATATTGATT GTGGGGTCGG TGTGCGCGCC GTCAGTGGTG AAAAAACCGG TTTTGCTTAT
TCCGACCAAA TTCAGTTAGA AGGTTTAAAG CAGAGTGCCA TCGCGGCGCG TGGGATTGCT
CAACAAGGCC AAAACCTCAC CGTACAAGCG TTTAAGCGCG CGCAACATCC TGCGTTTTAT
GGCGCGCATA ACCCACTGGA AAGTTGGGAA AAACAGCAAA AAACCGAACT GCTGAAACAA
CTGGATGCGT ACATTCGTAC TAAAGAGCCT CTCATTACCG AAGTGTCAGT CAGTCTAAGT
GGTGTGCATG AGCAGATCCT CGTGGCGGCT ACCGATGGCA CGTACGCAGG GGATATTCGT
CCTCTGGTTC GTCTTTCGAT CAGTGTGTTG GCGCAAAAAG GCGATCGCCG TGAGCGCGGT
AGCGCCGGTG GTGGTGGCCG TTTTGGTTAC GACTATTTCT TACAAGAAGA AGCGGGACAA
AAAATCGCGT TTTCTTTCGC CGATGAAGCG ATTCGTCAAG CGCTCGTTAA CCTTGAAGCG
GTAGCCGCTC CTGCCGGAAC CATGCCTGTG GTACTCGGTT CTGGTTGGCC GGGTGTGTTG
CTGCATGAGG CGGTGGGTCA TGGCCTGGAA GGCGATTTTA ACCGTAAAGG CTCGTCGGTA
TTTGCAGGCA AAGTCGGCAA AAAAGTCACT TCCGATCTGT GTACGATTGT CGATGACGGT
ACACTCAAAG ATCTGCGCGG CTCTCTCAAC GTTGATGATG AAGGGGTAAG TGGTCAATAC
AACGTGCTGA TCGAAAAAGG TATTTTGAAA GGCTACATCC AAGACAAGCT CAATGCTCGT
TTAATGGGCG TGGCACCAAC GGGTAACGGA CGCCGTGAAT CTTACGCTCA TCTGCCGATG
CCGCGTATGA CCAATACTTA CATGCTACCG GGCGAGCACA CACCAGAAGA GATCATCGCT
TCGGTGAAAA AAGGCATTTA CGCGCCGAAC TTTGGTGGCG GTCAGGTCGA TATCACCTCC
GGTAAGTTTG TGTTCTCGGC CTCTGAAGCT TACTTGATTG AAAATGGCAA AATCACCCGT
CCAATCAAAG GCGCAACTCT GATTGGTTCT GGTATTGAAG CCATGCAGCA GGTATCTATG
GTCGGTAACG ATCTGGCGCT GGATCGTGGT GTTGGCGTGT GTGGTAAAGC CGGACAAAGC
GTGCCTGTGG GCGTTGGCCA GCCAACTCTG AAGTTGGATG CCCTGACCGT GGGTGGGACA
GAGTAA
 
Protein sequence
MTMNQIETAL LAPAGLTEQD IADTLSSIAT RQIDYADIYF QSSWHESLVL EDSIIKDGSF 
NIDCGVGVRA VSGEKTGFAY SDQIQLEGLK QSAIAARGIA QQGQNLTVQA FKRAQHPAFY
GAHNPLESWE KQQKTELLKQ LDAYIRTKEP LITEVSVSLS GVHEQILVAA TDGTYAGDIR
PLVRLSISVL AQKGDRRERG SAGGGGRFGY DYFLQEEAGQ KIAFSFADEA IRQALVNLEA
VAAPAGTMPV VLGSGWPGVL LHEAVGHGLE GDFNRKGSSV FAGKVGKKVT SDLCTIVDDG
TLKDLRGSLN VDDEGVSGQY NVLIEKGILK GYIQDKLNAR LMGVAPTGNG RRESYAHLPM
PRMTNTYMLP GEHTPEEIIA SVKKGIYAPN FGGGQVDITS GKFVFSASEA YLIENGKITR
PIKGATLIGS GIEAMQQVSM VGNDLALDRG VGVCGKAGQS VPVGVGQPTL KLDALTVGGT
E