| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2827 |
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| Symbol | mshA |
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| ID | 5136314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2977535 |
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| End bp | 2978071 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640534271 |
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| Product | MSHA pilin protein MshA |
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| Protein accession | YP_001218677 |
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| Protein GI | 147673684 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 0.99325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTAATAA TGAAAAGACA AGGTGGTTTC ACCCTAATCG AATTGGTCGT GGTGATTGTA
ATTCTCGGTA TCTTGGCCGT CACAGCAGCG CCACGTTTCT TAAACCTGCA AGGCGATGCG
CGAGAAGCGT CTTTAGAAGG TCTTCGAGGT GCAGTTGCTG GTGCAATGGG TATCTCATAT
GGACGAGCTG CAATTAAAGG CATTGAAACG TTAGACTACA CAGCATATAC AGATGCAAAT
ACACCTGGAA CAGTTATTGA TGGCATTGCC CATAAGTTTG GTTATCCAAC GGCAGTAAAT
GATTCAACAG CAAATCTAGG TGGTATTATG CAAACGCTAG ATACTTCGAG TGAGTTTATT
GCGTTGCAAT CGTCTACAGG AACAAATAGT AATCAAGCTA ATTTATGGAT TGACATAGGC
TTCAATGGTT ATAACGATCT ATGTGTCCGT TATACAGCTG CAACCTCTAA TAATCCTGCA
ACGGTTGCTA TGCAGACTGG GGTTGCTGGA ACTGCTTGTG GTAAACCAGC GCAATAA
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| Protein sequence | MVIMKRQGGF TLIELVVVIV ILGILAVTAA PRFLNLQGDA REASLEGLRG AVAGAMGISY
GRAAIKGIET LDYTAYTDAN TPGTVIDGIA HKFGYPTAVN DSTANLGGIM QTLDTSSEFI
ALQSSTGTNS NQANLWIDIG FNGYNDLCVR YTAATSNNPA TVAMQTGVAG TACGKPAQ
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