Gene VC0395_A2826 details

Gene Information

• Locus tag: VC0395_A2826
• Symbol: mshB
• ID: 5135568
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2976955
• End bp: 2977509
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640534270
• Product: MSHA pilin protein MshB
• Protein accession: YP_001218676
• Protein GI: 147673466
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA TGCAGCAAGG CTTTTCATTG GTGGAACTGG TCATCGTGAT TGTGGTGGTT 
GGGTTACTGG CTGTCGCCGC TTTGCCCCGT TTTCTTGATG TGACCGATGA GGCGAAGAAA 
GCCAGTATTG AGGGGGTTGC AGGGGGCTTT GCCACTGGTG TTCTCTCTGC ACGAGCGCAA 
TGGGAGGCGC AAGCTCGCCC CACGTTGACC GCCAATAATT ACCCTTCCAT TAATTATGAT 
GGAGTTAATT TTTGGTTAAC CACCTCCGCA ACCAGCGGCT ATCGTGATGG TTATCCTTTG 
GGCTTGAATA CCGATGATGC GACTTATCCT TCAGGTCTCA CGGATCAGGC TTGTATAGAT 
TTAATGAACA ATTTGCTGCA AAACCCACCT CAAGTGGGCA CGGAAACTCA AGCGGCGAGC 
AATTCTAATT ACAAATATTC AGCGAAAGCG AATAGTGGTG CTGCCACATG CACTTATGCG 
CAAAATGAAA AAGGCAGCCA ACATGAATTT GTTTATGAAG TTAACACTGG TCGCGTGACC 
GTAACCTTGC AGTAA 

 

Protein sequence

MKKMQQGFSL VELVIVIVVV GLLAVAALPR FLDVTDEAKK ASIEGVAGGF ATGVLSARAQ 
WEAQARPTLT ANNYPSINYD GVNFWLTTSA TSGYRDGYPL GLNTDDATYP SGLTDQACID 
LMNNLLQNPP QVGTETQAAS NSNYKYSAKA NSGAATCTYA QNEKGSQHEF VYEVNTGRVT 
VTLQ