| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2808 |
|---|
| Symbol | metH |
|---|
| ID | 5137354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2951123 |
|---|
| End bp | 2954803 |
|---|
| Gene Length | 3681 bp |
|---|
| Protein Length | 1226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640534252 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | YP_001218658 |
|---|
| Protein GI | 147675082 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAAAG AAGTAAGACA ACAACTCGAA CAGCAATTGA AACAACGTAT CCTACTGATT
GATGGTGGTA TGGGTACCAT GATTCAGAGT TATAAGTTAC AAGAGGAAGA CTATCGCGGT
GCACGATTTG TCGATTGGCA CTGTGATTTG AAAGGAAATA ACGACCTCTT AGTGCTTACT
CAGCCGCAAA TTATTAAAGA GATTCACTCC GCTTACCTTG AAGCGGGGGC GGATATTCTT
GAGACCAACA CCTTTAACTC AACCACGATT GCCATGGCAG ACTATGACAT GCAATCGCTC
AGTGCTGAAA TTAACTTTGC CGCGGCTAAG CTTGCACGTG AAGTCGCGGA TGAGTGGACG
GCTAAAGATC CAAGTCGGCC ACGCTATGTG GCTGGTGTGC TTGGGCCAAC CAACCGTACT
TGCTCTATTT CGCCAGATGT GAACGATCCA GGATTTCGTA ACGTCACTTT TGATGGGCTT
GTTGAAGCCT ATTCCGAATC GACGCGCGCT TTGATCAAAG GTGGCAGCGA TCTGATCCTC
ATTGAAACCA TCTTCGATAC ACTTAACGCC AAAGCCTGTG CGTTTGCGGT CGATAGCGTA
TTTGAAGAGC TGGGCATCAG CTTACCTGTG ATGATTTCCG GCACGATTAC CGATGCCTCT
GGGCGAACTC TGTCAGGACA GACAACGGAA GCTTTCTACA ACGCCTTGCG TCATGTACGG
CCGATTTCGT TTGGCTTGAA CTGTGCGTTA GGTCCTGATG AGCTGCGCCA GTACGTGGAA
GAGCTTTCAC GCATTTCAGA ATGCTATGTT TCCGCGCACC CAAATGCCGG ACTGCCCAAT
GCGTTTGGTG AATACGATCT CTCTGCCGAG GAAATGGCAG AACATATTGC GGAATGGGCA
CAAGCTGGCT TTTTGAATTT GGTCGGTGGT TGCTGTGGAA CTACACCTGA GCATATCGCC
GCCATTGCCA AAGCCGTCGA GGGTGTAAAA CCAAGGGCTC TGCCAGATCT GAAAGTAGAA
TGTCGTCTCT CGGGTTTAGA GCCGCTCAAT ATTGGCCCTG AAACCTTGTT TGTTAACGTG
GGCGAACGTA CTAACGTCAC CGGTTCTGCG CGTTTTAAGC GTTTAATTAA AGAAGAGCAA
TACGACGAAG CGCTCGATGT GGCGCGTGAG CAAGTCGAAA ACGGCGCGCA GATCATTGAT
ATCAACATGG ATGAAGGCAT GTTGGACGCC GAGGCGTGTA TGGTGCGCTT TTTGAATCTA
TGCGCCTCTG AACCAGAAAT ATCCAAAGTT CCGGTGATGG TCGACTCCTC TAAATGGGAA
GTCATTGAAG CGGGTCTGAA ATGCATTCAG GGTAAAGGCA TCGTCAACTC TATCTCTCTA
AAAGAAGGGA AAGAGAAGTT TATTGCCCAA GCCAAATTGG TGCGCCGCTA CGGTGCCGCG
GTGATTGTGA TGGCATTTGA CGAAGTGGGC CAAGCCGATA CCCGTGAGCG CAAATTAGAG
ATCTGTCGTC GGGCTTACCA TATTTTGGTC GATGAGGTGG GCTTCCCACC GGAAGATATT
ATTTTTGACC CGAACATCTT TGCTGTTGCG ACCGGAATTG ATGAGCACAA TAACTACGCA
CTGGATTTCA TTAATGCAGT GGCGGACATT AAGCGTGAGC TGCCGCATGC GATGATTTCT
GGCGGTGTTT CTAACGTTTC CTTCTCTTTC CGCGGCAACA ACTATGTGCG TGAAGCGATC
CATGCTGTTT TCCTTTATCA CTGCTTCAAA CACGGCATGG ACATGGGGAT TGTCAACGCA
GGGCAGCTTG AAATCTACGA TAACGTTCCG CTGAAACTGC GTGAGGCAGT GGAAGATGTG
ATCCTCAATC GACGTAGCGA TGGCACGGAA AGACTGCTTG AGATCGCCGA AGCGTATCGC
GAAAACAGTG TTGGTAAAGA AGAGGATGCT TCTGCATTAG AGTGGCGCGC ATGGCCTGTG
GCTAAGCGCC TAGAGCACGC TTTAGTCAAA GGCATCACCG AATTTATCGT CCAAGACACT
GAAGAAGCAC GTCAGCAAGC CAGTAAACCA CTGGAAGTGA TTGAAGGGCC GCTGATGGAT
GGTATGAACG TGGTCGGTGA CTTGTTCGGG GAAGGGAAAA TGTTCCTACC GCAAGTCGTA
AAATCAGCGC GTGTCATGAA ACAAGCCGTT GCGTATCTTG AGCCTTTCAT TAATGCGCAA
AAAAGTGGTA GCACTTCAAA TGGTAAGATT TTGCTGGCGA CCGTAAAAGG CGATGTGCAT
GACATTGGTA AGAACATTGT TGGCGTCGTG CTGCAGTGTA ATAACTTCGA GATCATCGAT
CTTGGTGTGA TGGTGCCTTG CGAGCAGATC CTCAAAGTCG CACGCGAGCA AAATGTCGAT
ATCATCGGTC TCTCTGGGCT TATCACGCCG TCTTTGGATG AGATGGTACA CGTGGCGAAA
GAGATGGAGC GACAAGGGTT TGAACTGCCA CTTTTGATTG GTGGGGCAAC AACGTCTAAA
GCGCATACTG CGGTGAAGAT TGAACAGAAT TATCATGCGC CTGTAGTGTA CGTGAATAAC
GCGTCGCGCG CGGTAGGGGT GTGCACATCA TTATTGTCTG ATGAACAGCG CCCCGGATTT
ATCGAACGTT TGGATCTCGA TTATGAGCGC ACGCGTGATC AGCATGCTCG TAAAACGCCC
AAATCGCGCC CAGTCACGTT AGAGCAGGCA CGTGCTAATA AAGCGGCGCT GGATTGGGCA
AATTACACGC CGCCCGCTCC TGCGAAACCG GGTGTGCATG TGTTTGAAAA CATTGCGTTA
GCCACACTAC GTCCTTATAT CGATTGGACG CCTTTTTTTA TGACTTGGTC GCTTATGGGC
AAATACCCTG CCATTTTGGA GCATGAAGAG GTCGGTGAAG AGGCCAAACG TCTGTTTCAT
GATGCCAATG CCTTACTTGA TAAAGTAGAG CGAGAAGGAC TACTGAAAGC CAGTGGTATG
TGTGCACTGT TTCCAGCAGC CAGCGTGGGC GATGACATTG AGGTGTACAG TGATGAATCG
CGTACGCAAG TCGCGCATGT GCTGTACAAC TTGCGTCAGC AGACTGAGAA ACCGAAAGGG
GCCAACTACT GTTTGTCGGA CTATGTTGCT CCGAAAGAGA GCGGTAAACG TGATTGGATT
GGCGCGTTTG CAGTAACTGG TGGCATTGGT GAGCGAGCCT TGGCCGATGC TTATAAAGCT
CAGGGTGATG ATTACAATGC GATCATGATC CAAGCGGTAG CCGATCGTTT GGCGGAAGCC
TTTGCGGAAT ATCTGCATGA AAAAGTGCGT AAAGAGATTT GGGGTTATGC GAGCGATGAA
AATCTCTCCA ATGATGACCT GATCCGTGAG CGTTATCAGG GCATTCGACC CGCGCCGGGG
TATCCCGCGT GTCCTGAGCA TACCGAGAAA GCGACTTTGT GGCAGATGCT AAATGTCGAA
GAGACCATAG GTATGTCACT GACCACAAGC TATGCGATGT GGCCGGGCGC TTCGGTATCC
GGTTGGTATT TCTCGCATCC CGATTCTCGC TATTTTGCGG TAGCGCAGAT CCAACCAGAT
CAACTGCACA GCTACGCTGA GCGTAAAGGT TGGCGTTTGG AAGAAGCTGA AAAGTGGCTA
GCGCCTAACC TTGATGCTTA A
|
|---|
| Protein sequence | MGKEVRQQLE QQLKQRILLI DGGMGTMIQS YKLQEEDYRG ARFVDWHCDL KGNNDLLVLT
QPQIIKEIHS AYLEAGADIL ETNTFNSTTI AMADYDMQSL SAEINFAAAK LAREVADEWT
AKDPSRPRYV AGVLGPTNRT CSISPDVNDP GFRNVTFDGL VEAYSESTRA LIKGGSDLIL
IETIFDTLNA KACAFAVDSV FEELGISLPV MISGTITDAS GRTLSGQTTE AFYNALRHVR
PISFGLNCAL GPDELRQYVE ELSRISECYV SAHPNAGLPN AFGEYDLSAE EMAEHIAEWA
QAGFLNLVGG CCGTTPEHIA AIAKAVEGVK PRALPDLKVE CRLSGLEPLN IGPETLFVNV
GERTNVTGSA RFKRLIKEEQ YDEALDVARE QVENGAQIID INMDEGMLDA EACMVRFLNL
CASEPEISKV PVMVDSSKWE VIEAGLKCIQ GKGIVNSISL KEGKEKFIAQ AKLVRRYGAA
VIVMAFDEVG QADTRERKLE ICRRAYHILV DEVGFPPEDI IFDPNIFAVA TGIDEHNNYA
LDFINAVADI KRELPHAMIS GGVSNVSFSF RGNNYVREAI HAVFLYHCFK HGMDMGIVNA
GQLEIYDNVP LKLREAVEDV ILNRRSDGTE RLLEIAEAYR ENSVGKEEDA SALEWRAWPV
AKRLEHALVK GITEFIVQDT EEARQQASKP LEVIEGPLMD GMNVVGDLFG EGKMFLPQVV
KSARVMKQAV AYLEPFINAQ KSGSTSNGKI LLATVKGDVH DIGKNIVGVV LQCNNFEIID
LGVMVPCEQI LKVAREQNVD IIGLSGLITP SLDEMVHVAK EMERQGFELP LLIGGATTSK
AHTAVKIEQN YHAPVVYVNN ASRAVGVCTS LLSDEQRPGF IERLDLDYER TRDQHARKTP
KSRPVTLEQA RANKAALDWA NYTPPAPAKP GVHVFENIAL ATLRPYIDWT PFFMTWSLMG
KYPAILEHEE VGEEAKRLFH DANALLDKVE REGLLKASGM CALFPAASVG DDIEVYSDES
RTQVAHVLYN LRQQTEKPKG ANYCLSDYVA PKESGKRDWI GAFAVTGGIG ERALADAYKA
QGDDYNAIMI QAVADRLAEA FAEYLHEKVR KEIWGYASDE NLSNDDLIRE RYQGIRPAPG
YPACPEHTEK ATLWQMLNVE ETIGMSLTTS YAMWPGASVS GWYFSHPDSR YFAVAQIQPD
QLHSYAERKG WRLEEAEKWL APNLDA
|
|---|
| |