| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2755 |
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| Symbol | amiB |
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| ID | 5136339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2907406 |
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| End bp | 2909151 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640534201 |
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| Product | N-acetylmuramoyl-L-alanine amidase |
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| Protein accession | YP_001218613 |
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| Protein GI | 147675682 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00949544 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACCTT TTGAGTCAGT TGGAGTTATG TTGAACGTTA GCCGTTTTGT ATTCTTACTC
TTTGGATTCG TTTTACTCGC GATCGCTCCT CAAACTTGGG CGAACGTTTT GGAAGGCGTG
CGCGTGTGGC CTTCTCCTGA TGAGACACGA GTGGTATTAG ATGTCAAATC CGAGGTGGAT
TACAGCTACT TTACCCTCAG CTCTCCTGAG CGCTTGGTGG TTGACCTCAA ACAGAGCACC
TCTCGCGCTA AGTTACCGGT TAATGTCACT GAAAGTGGCA TTTTATCGAA AGTTCGCGCT
TCATCTCCCC CTGAAAAAAG TACATTTCGT TTGGTGTTTG AGCTCAAACA AAAAACAACG
CCAACTTTAT TTAAATTGGC TCCGACACCC GGTGGTCAAT ATGGCCATCG TTTAGTCATT
GATATGCCAC ATGGCAAAGT GAGTGAGAGC TCTTCCGCCA GCACGCCGAG TTCACCCGCT
CAAGTCAGTA AAGATGCCTC TCAACTCTTA GGGAATGACG ATATTGTGGT GGCGATTGAC
GCGGGACATG GCGGTGAAGA TCCTGGTTCC ATTGGTCCTA CACGCAAATA TGAAAAAGAC
ATCACCTTGA GCGTGTCTAA AAAGTTGGCG GATCAACTCA ATGCAGTGCC GGGAATGAAA
GCGGTACTGA CTCGCCGTGG TGACTATTTT GTAAATCTGA ATAAACGTAC GGAAATTGCG
CGTCGTAGCA AGGCGCACTT GTTGGTTTCG GTGCATGCGG ATGCGTTTCA TACTCCACAG
CCGCGCGGGG GATCGGTGTT TGTGCTGAAT ACCCGCCGTG CCAATACCGA AATTGCCCGT
TGGGTGGAAA ATCACGAGCA ACAATCTGAA TTGCTGGGCG GTGCTGGCGA AGTACTTTCG
AAAACCAATA ACGATCGTAA CGTGAGTCAG ACCCTACTGG ATCTGCAGTT TAGCCATTCG
CAAAAAGAGG GCTATAAAGT CGCGACGAAT ATTTTGCGTG AAATGGGCAA GGTGGCGCAT
CTGCATAAAA CCGAACCCGT TAATGCAAGT TTGGCGGTAT TGAAGTCACC AGACATCCCA
TCGGTACTGG TGGAAACAGG CTTTATCTCT AACCCATCAG AAGAAAAATT GCTGATTCAG
CGCAGTCATC AAGATAAGTT AGCTCGCGCT TTAGCCACGG CGATTGTGCA GTACTTTGAA
GATAATCCGC CAGAGGGCAC ACTGTTTGCC AACCGAGGTA AAGCTCAGAA ACACAAAGTG
CAGCGTGGAG AATCAATTGG TCTGATTGCT AACCAGTATG GGGTCAGTGT CGATGCTTTG
AAAAAAGCCA ACAACCTCAA GTCTTCGACG ATTTCGGTTG GGCAACTGCT GACTATTCCA
GCTTCTTCAG CACCAAACCC AGTACCTGTT CCTGTGATGG CAAATCCTGT AGAAACGGAA
ACTATTACCC ATGTGGTAAA AACGGGCGAT TTTCTCGGTA AACTTGCCAC CACCTATAAG
GTTTCAGTGG CTTCGATAAA AAAAGAGAAC AATCTGAAAT CGGATACTCT AGTGCTCGGG
CAGAAGCTGA AAATCACGGT GAGTTTAAAA GATAAGCCGC TGCGTAAGCA CAAGGTGCAG
CGCGGTGAAT TCCTGAGCAA AATCGCTGAT CAATACAATG TTAGCGTTGA TAGCATTCGC
CAAGCCAACC AGCTACGCAC TGACCAATTG TTGGTTGGGC AGCAACTGAT TATCCCGAAT
AAATAA
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| Protein sequence | MRPFESVGVM LNVSRFVFLL FGFVLLAIAP QTWANVLEGV RVWPSPDETR VVLDVKSEVD
YSYFTLSSPE RLVVDLKQST SRAKLPVNVT ESGILSKVRA SSPPEKSTFR LVFELKQKTT
PTLFKLAPTP GGQYGHRLVI DMPHGKVSES SSASTPSSPA QVSKDASQLL GNDDIVVAID
AGHGGEDPGS IGPTRKYEKD ITLSVSKKLA DQLNAVPGMK AVLTRRGDYF VNLNKRTEIA
RRSKAHLLVS VHADAFHTPQ PRGGSVFVLN TRRANTEIAR WVENHEQQSE LLGGAGEVLS
KTNNDRNVSQ TLLDLQFSHS QKEGYKVATN ILREMGKVAH LHKTEPVNAS LAVLKSPDIP
SVLVETGFIS NPSEEKLLIQ RSHQDKLARA LATAIVQYFE DNPPEGTLFA NRGKAQKHKV
QRGESIGLIA NQYGVSVDAL KKANNLKSST ISVGQLLTIP ASSAPNPVPV PVMANPVETE
TITHVVKTGD FLGKLATTYK VSVASIKKEN NLKSDTLVLG QKLKITVSLK DKPLRKHKVQ
RGEFLSKIAD QYNVSVDSIR QANQLRTDQL LVGQQLIIPN K
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