Gene VC0395_A2730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2730 
SymbolrpoB 
ID5137372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2882357 
End bp2886484 
Gene Length4128 bp 
Protein Length1375 aa 
Translation table11 
GC content49% 
IMG OID640534176 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_001218596 
Protein GI147674155 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.15817 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTCAC ACTACAGTAA ACAGCGATTA GTCACTGTCC TCACCCTTTT TAACCTGAAA 
GGTGGACAGT TTGGGTCACT TATCAGCGAG CTGAGGAACC CCATGGTTTA CTCTTATACC
GAGAAAAAGC GCATCCGTAA GGACTTTGGT ACTCGTCCAC AAGTGTTGGA CATTCCATAC
CTGCTATCGA TCCAGCTCGA TTCGTTCGAA AAGTTCATCG AACAGGATCC TGAAGGACAA
TACGGTCTTG AAGCCGCTTT TCGTTCTGTA TTTCCAATTC AGAGCTATAA CGGCAATTCA
GAGCTGCAAT ACGTTAGCTA CCGTCTTGGT GAGCCAGTTT TTGACGTTAA AGAATGTCAA
ATCCGTGGTG TAACTTATTC AAAACCGCTA CGCGTGAAAT TACGCTTAGT GATCTTTGAT
AAAGACGCGC CAGCAGGTAC TGTCAAAGAT ATTAAAGAAC AAGAAGTCTA CATGGGCGAA
ATTCCGCTCA TGACAGAAAA TGGTACCTTC GTAATCAATG GTACTGAGAG GGTTATCGTA
TCCCAGCTGC ACCGAAGCCC AGGCGTGTTC TTCGACAGCG ATAAGGGTAA GACCCACTCT
TCAGGTAAAG TTCTGTATAA CGCACGTATC ATTCCGTACC GTGGTTCATG GCTCGATTTT
GAGTTCGATC CAAAAGACAA CCTGTACGTA CGTATTGACC GTCGTCGTAA GCTGCCTGCA
TCGATCATCC TGCGTGTACT AGGTAAAACT AGCGCCGAGA TCCTGGACAT CTTCTTCGAA
AAAGTGAATT TCGAAGTGAA AGATCAAACT CTAATGATGG AGTTGGTTCC AGAGCGTCTG
CGTGGTGAAA CTGCGACCTT CGATATCGAA GCGGATGGCA AGGTTTACGT AGAGAAAGGC
CGTCGTGTGA CTGCACGTCA CATCCGTCAA CTTGAAAAAG ATGGCGTGAA CTTTATTGAA
GTTCCGGTTG AGTACATCGT AGGTAAAGTA TCTGCGAAAG ATTACGTGAA TGAAGCGACT
GGCGAACTGA TCATTACCGC GAACCAGGAA ATCAGCCTGG AAGCGCTAGC GAACCTGTCT
CAAGCCGGTT ACAAAAAGCT AGAAGTTCTA TTTACCAATG ATCTGGACCA CGGTCCGTTC
ATGTCAGAAA CCCTGCGTGT TGATAGCACG ACAGATCGCA TCTCTGCACT GGTAGAAATC
TACCGCATGA TGCGCCCTGG CGAGCCACCA ACGAAAGAAG CCGCGGAATC GCTGTTTGAA
AGTCTATTCT TCTCTGCAGA GCGTTACGAT CTGTCGACTG TTGGCCGTAT GAAGTTCAAC
AGCTCAATCG GTCGTGAAGA TGCGGAAGAG CAAGGCACGC TGGACGAAGT TGACATCATC
GAAGTGATGA AAAAGCTGAT CTCGATTCGT AACGGTAAAG GCGAAGTGGA CGATATCGAC
CACCTTGGCA ACCGTCGTAT CCGTAGTGTC GGCGAAATGG CAGAGAACCA ATTCCGTGTT
GGTCTGGTAC GTGTTGAACG CGCAGTGAAA GAACGCCTAA GCTTGGGCGA TCTGGACAAC
GTGATGCCAC AAGACCTGAT CAACGCGAAA CCAATTTCTG CTGCTGTAAA AGAATTCTTT
GGTTCTTCTC AGCTGTCTCA GTTTATGGAT CAGAACAACC CGTTGTCAGA AGTGACGCAT
AAGCGTCGTA TTTCTGCATT GGGCCCTGGC GGTCTGACTC GTGAGCGTGC TGGCTTCGAA
GTACGTGACG TACACGTAAC GCACTACGGT CGTCTATGTC CTATCGAAAC ACCTGAAGGT
CCAAACATCG GTTTGATCAA CTCGCTGTCT GCGTTTGCAC GCTGCAACGA GTACGGTTTC
CTAGAAACCC CTTACCGTCG CGTAGTCAAC GGTGTTGTGA CTGACGAAGT GGATTACCTC
TCTGCGATTG AAGAAGGTCA ATTCGTTATC GCTCAGGCGA ACGCTAAGCT GACAGAAGAA
GGCGGTTTTG CTGATGAACT GGTTACCGCA CGTCAAAAAG GCGAGTCAGG TCTTCACCCA
CGTGAACACG TTGACTACAT GGACGTTGCG ACAAACCAAG TTGTATCGAT CGCGGCATCC
TTGATCCCGT TCCTAGAACA CGACGATGCG AACCGTGCTT TGATGGGTGC GAACATGCAA
CGTCAGGCGG TTCCAACTCT GCGTTCAGAG AAACCACTGG TTGGTACGGG TATCGAGCGT
AACGTCGCGG TTGACTCTGG TGTAACAGCG GTGGCGAAAC GTGGCGGTGT TATCCAGTCA
GTTGACGCTT CTCGTATCGT AGTCAAAGTG AACGAAGAAG AGTTGATCCC TGGCGAAGCG
GGTATCGACA TCTACAACCT GACTAAGTAC ACCCGTTCGA ACCAGAATAC TTGTATCAAC
CAGCGTCCAT GTGTGATGCC GGGTGAACCT GTAGCTCGTG GCGATGTACT GGCAGACGGT
CCTTCCACTG ACCTTGGCGA ACTGGCTCTT GGCCAAAACA TGCGTATCGC ATTCATGCCT
TGGAACGGTT ACAACTTCGA AGACTCGATC TTAGTGTCTG AGCGCGTAGT TCAAGATGAC
CGCTTTACCA CTATCCACAT CCAAGAGCTT TCTTGTGTGG CGCGTGATAC TAAGCTGGGC
GCAGAAGAGA TCACGGCTGA CATCCCTAAC GTGGGTGAAG CGGCTCTGTC TAAGCTTGAC
GAATCTGGCA TCGTGTACAT CGGTGCAGAA GTGAAAGGCG GCGACATTCT GGTTGGTAAA
GTGACACCAA AAGGTGAAAC TCAACTGACT CCAGAAGAGA AACTGCTGCG TGCGATCTTC
GGTGAGAAAG CCTCAGACGT GAAAGATACG TCTCTGCGTG TACCGAACTC AGTAGCAGGT
ACGGTTATCG ACGTACAAGT CTTTACTCGC GATGGCGTAG AGAAAGACAA GCGTGCGCTT
GAAATCGAAC AGATGCAGCT GAAAGAAGCG AAGAAAGACC TGACTGAAGA GTTCCAAATT
CTGGAAGGCG GTCTTCTGGC GCGTGTTCGT TCTGTACTGC TGGCGGGTGG TTACACTGAA
GCGAAACTGA GTTCAATCGA ACGTAAGAAA TGGTTAGAGC AGACGCTTGA AAATGAAGAG
CTGCAAAACC AGCTAGAGCA ACTGGCAGAA CAGTACGATG AACTGAAAGC AGACTTCGAT
AAGAAGTTTG AAGCGAAGCG TCGTAAGATC ACCCAAGGTG ATGATCTGGC TCCTGGCGTA
CTGAAGATTG TTAAGGTTTA CCTAGCAGTG AAACGTCGCA TCCAGCCGGG TGATAAGATG
GCGGGTCGTC ACGGTAACAA GGGTGTTATT TCTAAGATCA ACCCTGTTGA AGACATGCCA
TACGATGAAA ACGGTCAGCC GGTTGACATC GTACTGAACC CACTGGGCGT ACCATCACGT
ATGAACATCG GTCAGATCCT AGAAGTTCAC TTGGGTCTGG CGGCGAAAGG TATCGGTGAC
AAGATCAACC AAATGATCAA GGAACAACAA GAGCTGGCGA AGCTGCGTGA GTTCCTGCAG
AAGGTTTATG ATCTAGGCGA TACTCGCCAA CGTGTTGATA TCTCAGAACT CAGTGATGAA
GATGTTCGTA CACTGGCGCA TAACCTGCGT GCTGGTCTAC CGGTCGCAAC GCCAGTCTTC
GATGGTGCTC CTGAATCGTC TATCAAAGCT ATGTTGGAAC TGGCGGATCT GCCAGCTTCA
GGTCAGTTGA CTCTGTTCGA TGGCCGCACG GGTGACGCAT TTGAGCGTCC TGTTACCGTG
GGTTACATGT ACATGCTGAA ACTGAACCAC TTGGTTGACG ACAAGATGCA CGCTCGTTCT
ACAGGCTCTT ACAGTCTGGT TACTCAGCAA CCTCTGGGTG GTAAAGCTCA GTTCGGTGGT
CAGCGCTTCG GTGAGATGGA AGTGTGGGCA CTGGAAGCAT ACGGTGCTGC GTATACCCTG
CAAGAGATGT TGACCGTTAA ATCGGACGAC GTGAACGGCC GTACTAAGAT GTATAAGAAC
ATCGTAGATG GCAATCACGC GATGGAACCT GGTATGCCAG AATCGTTCAA CGTACTGTTG
AAAGAGATTC GCTCGCTGGG TATCAACATC GAGCTAGAAG ACGAATAA
 
Protein sequence
MNSHYSKQRL VTVLTLFNLK GGQFGSLISE LRNPMVYSYT EKKRIRKDFG TRPQVLDIPY 
LLSIQLDSFE KFIEQDPEGQ YGLEAAFRSV FPIQSYNGNS ELQYVSYRLG EPVFDVKECQ
IRGVTYSKPL RVKLRLVIFD KDAPAGTVKD IKEQEVYMGE IPLMTENGTF VINGTERVIV
SQLHRSPGVF FDSDKGKTHS SGKVLYNARI IPYRGSWLDF EFDPKDNLYV RIDRRRKLPA
SIILRVLGKT SAEILDIFFE KVNFEVKDQT LMMELVPERL RGETATFDIE ADGKVYVEKG
RRVTARHIRQ LEKDGVNFIE VPVEYIVGKV SAKDYVNEAT GELIITANQE ISLEALANLS
QAGYKKLEVL FTNDLDHGPF MSETLRVDST TDRISALVEI YRMMRPGEPP TKEAAESLFE
SLFFSAERYD LSTVGRMKFN SSIGREDAEE QGTLDEVDII EVMKKLISIR NGKGEVDDID
HLGNRRIRSV GEMAENQFRV GLVRVERAVK ERLSLGDLDN VMPQDLINAK PISAAVKEFF
GSSQLSQFMD QNNPLSEVTH KRRISALGPG GLTRERAGFE VRDVHVTHYG RLCPIETPEG
PNIGLINSLS AFARCNEYGF LETPYRRVVN GVVTDEVDYL SAIEEGQFVI AQANAKLTEE
GGFADELVTA RQKGESGLHP REHVDYMDVA TNQVVSIAAS LIPFLEHDDA NRALMGANMQ
RQAVPTLRSE KPLVGTGIER NVAVDSGVTA VAKRGGVIQS VDASRIVVKV NEEELIPGEA
GIDIYNLTKY TRSNQNTCIN QRPCVMPGEP VARGDVLADG PSTDLGELAL GQNMRIAFMP
WNGYNFEDSI LVSERVVQDD RFTTIHIQEL SCVARDTKLG AEEITADIPN VGEAALSKLD
ESGIVYIGAE VKGGDILVGK VTPKGETQLT PEEKLLRAIF GEKASDVKDT SLRVPNSVAG
TVIDVQVFTR DGVEKDKRAL EIEQMQLKEA KKDLTEEFQI LEGGLLARVR SVLLAGGYTE
AKLSSIERKK WLEQTLENEE LQNQLEQLAE QYDELKADFD KKFEAKRRKI TQGDDLAPGV
LKIVKVYLAV KRRIQPGDKM AGRHGNKGVI SKINPVEDMP YDENGQPVDI VLNPLGVPSR
MNIGQILEVH LGLAAKGIGD KINQMIKEQQ ELAKLREFLQ KVYDLGDTRQ RVDISELSDE
DVRTLAHNLR AGLPVATPVF DGAPESSIKA MLELADLPAS GQLTLFDGRT GDAFERPVTV
GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL
QEMLTVKSDD VNGRTKMYKN IVDGNHAMEP GMPESFNVLL KEIRSLGINI ELEDE