Gene VC0395_A2699 details

Gene Information

• Locus tag: VC0395_A2699
• Symbol: rho
• ID: 5137421
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2860376
• End bp: 2861635
• Gene Length: 1260 bp
• Protein Length: 419 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640534147
• Product: transcription termination factor Rho
• Protein accession: YP_001218577
• Protein GI: 147675619
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.000370225
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTAA CAGAACTGAA GAACACCCCT GTGTCTGATC TGGTTAAGCT TGGCGAAAGT 
CTGGGCCTTG AAAACCTGGC ACGCCTACGC AAACAAGACA TTATTTTCGC AATCCTCAAA 
GCACACGCAA AAAGTGGTGA AGACATTTTT GGCGATGGGG TTCTGGAAAT TCTTCAAGAC 
GGTTTTGGTT TCTTACGTAG TGCAGACAGT TCATACCTTG CTGGCCCTGA CGACATCTAT 
GTGTCACCTA GCCAAATTCG TCGCTTTAAC CTACGTACAG GCGACTCAAT TGCCGGGAAA 
ATTCGTCCGC CGAAAGAGGG TGAACGTTAC TTTGCATTGC TCAAAGTGAA CACTGTAAAC 
GATGACCGTC CAGACAACGC CCGCAACAAA ATCCTTTTCG AGAACTTAAC TCCTCTACAC 
GCCAATGAAC GTATGGTGAT GGAACGTGGC AATGGCTCCA CAGAAGACAT CACGGCGCGT 
GTTCTCGATT TGGCAGCACC GATTGGTAAA GGTCAACGTG GTTTGATCGT TGCTCCGCCA 
AAAGCGGGTA AAACCATGCT GCTACAAAAC ATCGCTCAAA GCATCGCCAG CAATCACCCT 
GAGTGTGTGC TGATGGTACT GCTGATTGAC GAGCGTCCAG AAGAAGTGAC TGAGATGCAG 
CGCCTAGTAA AAGGTGAAGT GGTTGCTTCA ACCTTTGATG AGCCAGCATC GCGCCACGTA 
CAAGTGGCAG AAATGGTGAT TGAAAAAGCC AAACGTCTGG TTGAACACAA GAAAGACGTG 
GTGATCCTAC TGGATTCAAT TACTCGTCTA GCGCGTGCCT ACAACACTGT GGTTCCTGCA 
TCAGGTAAAG TACTGACCGG TGGTGTGGAT GCGAACGCAT TGCATCGTCC TAAGCGTTTC 
TTTGGTGCGG CACGTAATGT AGAAGAAGGT GGTAGCTTGA CCATCATCGC TACTGCACTG 
GTTGATACCG GTTCTAAGAT GGATGAAGTG ATTTATGAAG AGTTCAAAGG TACAGGTAAC 
ATGGAACTGC ACTTGAACCG TAAGATTGCT GAAAAACGTG TTTTCCCAGC TATCGACTTC 
AACCGTTCAG GTACGCGTCG TGAAGAGTTA CTGACTAAGA CCGATGAGCT ACAAAAGATG 
TGGATTCTAC GCAAGATCGT TCACCCAATG GGCGAAACCG ATGCGATGGA ATTCCTGATT 
GATAAGTTAG CCATGACCAA AACCAACGAT GAGTTCTTTG ACGCGATGCG TCGACAGTAA 

 

Protein sequence

MNLTELKNTP VSDLVKLGES LGLENLARLR KQDIIFAILK AHAKSGEDIF GDGVLEILQD 
GFGFLRSADS SYLAGPDDIY VSPSQIRRFN LRTGDSIAGK IRPPKEGERY FALLKVNTVN 
DDRPDNARNK ILFENLTPLH ANERMVMERG NGSTEDITAR VLDLAAPIGK GQRGLIVAPP 
KAGKTMLLQN IAQSIASNHP ECVLMVLLID ERPEEVTEMQ RLVKGEVVAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVVPA SGKVLTGGVD ANALHRPKRF 
FGAARNVEEG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN MELHLNRKIA EKRVFPAIDF 
NRSGTRREEL LTKTDELQKM WILRKIVHPM GETDAMEFLI DKLAMTKTND EFFDAMRRQ