Gene VC0395_A2673 details

Gene Information

• Locus tag: VC0395_A2673
• Symbol: cse
• ID: 5137303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2832479
• End bp: 2833126
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640534121
• Product: CRISPR-associated protein, Cse3 family
• Protein accession: YP_001218551
• Protein GI: 147675727
• TIGRFAM ID: [TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3

Plasmid Coverage information

• Num covering plasmid clones: 54
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAGC TGTTTGCCAG TGCCCTCCAC TTAGATAGAC GCGCGGTTAA GGCGCTGAAG 
ATAACGGATG CCTACTCCCT ACATCGAGTG GTTTATAGCC TTTTCCCGGA TGTGAGATCA 
CCTGAGGAAA AAGGAGGTCA TACGCAAAGT GGGATTGTCT ATGCCGATCA AGGGGGCGAT 
TTTCATGGCC GCAAAGTGCT GGTGGTTTCG GATCGTATGC CGAACGCTAG TGTAGATGGT 
GTACACGGTG AAGTAGTGAG CAAGACAATT TCTGAAGCGT TTCTCCACCA TCAAACTTAC 
CGTTTTAAAG TGCAAGTTAA TCCCGTCAGG AAAGACAAGC AAAGTGGTAA ACGTATTGCG 
GTGAAAGGTC GCCAAGATAT CGCTCAATGG TTTATTGAAA GGGCCGCGAA AAGTTGGGGC 
TTTGAAGTGC ATCCACAGCA TCTGCAAATC GATAGCATTG AGGTACAGCA ATTCAACGAT 
AAACACGGCC GTAAGATCAC CCTCGGAAAA GCTCATATTC AAGGGCAACT CCGCGTGACG 
AATGAACCGC AATTTCACCA CAGTTTTAAA CATGGCATTG GTAAAGGTCG GGCATTTGGC 
TGCGGCTTAC TGCAAATCGT ACCAATCATA GAAAATCCAT TTGCCTGA 

 

Protein sequence

MSELFASALH LDRRAVKALK ITDAYSLHRV VYSLFPDVRS PEEKGGHTQS GIVYADQGGD 
FHGRKVLVVS DRMPNASVDG VHGEVVSKTI SEAFLHHQTY RFKVQVNPVR KDKQSGKRIA 
VKGRQDIAQW FIERAAKSWG FEVHPQHLQI DSIEVQQFND KHGRKITLGK AHIQGQLRVT 
NEPQFHHSFK HGIGKGRAFG CGLLQIVPII ENPFA