Gene VC0395_A2638 details

Gene Information

• Locus tag: VC0395_A2638
• Symbol: rfbU
• ID: 5136348
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2790508
• End bp: 2792373
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640534086
• Product: mannosyl-transferase
• Protein accession: YP_001218516
• Protein GI: 147674200
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 42
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTACCC CTATTCAACT GCTCTTAAGC GCACAGCGTC ATCATAAGCG TATGATAACG 
TTGCTATATG ATGTATTTGC GCTGATGTTT TCCCTTTATG CTGCCATCGC ACTACGCTTA 
GATACTTTAG CATTCACGTT TAGCTTCCCA GAGTTTCTGA GCATGATGAC AACGGTAGGG 
GTCACTCTCT ACTGCTTTGT CCGACTCGGT ATGTATCGCG CAGTGCTACG TTATATGATG 
CTGCCTGCGA TCGGCTATAT CTTTTTGTCT GTCATCATTT CTGCGGTGAC GCTAGCACTA 
AGCGGCTTTT TCTTTCAGGC CTTTATTCCC CGCAGTGTCC CCTTTATTTA TGCAGGCCTA 
GCAACGCTGA CTTTAGGTGG GCCTAGAATT TTTATTCGCA CCATCTATTA CCATTATTAC 
AAGCGTCAGA AACCAAATGT TTTTATCTAT GGTGCAGGTT CAACAGGGCG AGATCTGGCC 
TATGCTCTCA TTCAAGGTGA TGAGTACCAC CCGGTAATCT TCTTAGATGA TGATCCAGCT 
AAAACAGGAC AAATTATATT TGGGCTGCGA GTGCACCATA GTAGTGATTT TGAATCACTC 
AGAAATCTTT ATGAACCCGT AAAGATGCTG ATCGCCATAA ATAATATCGG TAAAAATACA 
CGTATAAAAT TACTTGAACG ACTCTCTCAT TGGCCCATTG AGATTCAATC TGTCCCCTCA 
GTGGAAGATA TTGCTGCGGG ACGCGCAAAA GCGACTGATG TACAAGATCT TGATATCGCA 
GATTTGCTTG GCCGCGCACC GGTTGAACCC GACTTAGCGC TGTTACAAAA AAACATTACT 
GAAAAATCCG TCATGGTCAC TGGAGCGGGA GGTTCGATTG GCTCAGAGTT ATGCAGACAA 
ATCTTGGCTC AAAAACCTAA AACCTTAGTG TTATTTGAGC TCAATGAATA TAACTTGTAT 
ACCATCGATC AGGAATTACA AGCGATCAAA CAGAATTTAA AACTCAACAC GAAAATAGTT 
GCAGCACTTG GCTCAGTACA ACGTGAAAAC CGCGTCAAAA AACTCATGCA AGCTCATCAG 
GTTGAAACGG TTTACCATGC TGCAGCTTAT AAACACGTTC CTCTCGTTGA AGATAATGTT 
ATCGAAGGCA TTCGCAACAA TGTCTTTGGA ACATTAGCCT GTGCTAATGC AGCTATAGAA 
GCTGGCGTAA AAAACTTTAC TCTGATTTCA ACGGATAAAG CCGTGCGGCC AACGAATATC 
ATGGGAGCAA GCAAGCGGAT GGCAGAGCTG GTACTACAAG CCCTAGCCGA TAAAAACAGT 
ACAACCATTT TTACCATGGT ACGTTTCGGG AATGTCTTAG GCTCTTCAGG TTCGGTCGTT 
CCTCTATTCA AAAAACAGAT CCGCGCAGGT GGGCCAGTAA CGGTAACTCA CCCTGATATC 
ATCCGATATT TCATGCTGAT TCCAGAAGCC GCTCAGCTTG TCATTCAAGC TGGGGCGATG 
AGTCATAATG GACAAGTCTT TGTCCTCGAT ATGGGTGAAC CAGTAAAAAT CGTCGATCTC 
GCCAAACGTA TGATTCATCT TATGGGCATG AAAGAATTCT GCGATGGAAG AAGTGATGAA 
GGCGATATCG AGATCAAGTT TACTGGCTTG CGCCCAGGAG AAAAGCTCTA TGAAGAGCTA 
CTTATCGGAG AGAATGTGGA AGGCACTAGC CATCAAAAGA TCATGACAGC ATGTGAAGAA 
AAACTGAGTT GGGATGCCAT GGAAGACCTA CTCACGGAAC TTGATGTATG CTGTCATAAC 
TTTGATGTTG AATGTATTAA GCGAATTTTA CTTGATGCAC CTACGGGTTA TTCGCCACAA 
AAATGA 

 

Protein sequence

MFTPIQLLLS AQRHHKRMIT LLYDVFALMF SLYAAIALRL DTLAFTFSFP EFLSMMTTVG 
VTLYCFVRLG MYRAVLRYMM LPAIGYIFLS VIISAVTLAL SGFFFQAFIP RSVPFIYAGL 
ATLTLGGPRI FIRTIYYHYY KRQKPNVFIY GAGSTGRDLA YALIQGDEYH PVIFLDDDPA 
KTGQIIFGLR VHHSSDFESL RNLYEPVKML IAINNIGKNT RIKLLERLSH WPIEIQSVPS 
VEDIAAGRAK ATDVQDLDIA DLLGRAPVEP DLALLQKNIT EKSVMVTGAG GSIGSELCRQ 
ILAQKPKTLV LFELNEYNLY TIDQELQAIK QNLKLNTKIV AALGSVQREN RVKKLMQAHQ 
VETVYHAAAY KHVPLVEDNV IEGIRNNVFG TLACANAAIE AGVKNFTLIS TDKAVRPTNI 
MGASKRMAEL VLQALADKNS TTIFTMVRFG NVLGSSGSVV PLFKKQIRAG GPVTVTHPDI 
IRYFMLIPEA AQLVIQAGAM SHNGQVFVLD MGEPVKIVDL AKRMIHLMGM KEFCDGRSDE 
GDIEIKFTGL RPGEKLYEEL LIGENVEGTS HQKIMTACEE KLSWDAMEDL LTELDVCCHN 
FDVECIKRIL LDAPTGYSPQ K