Gene VC0395_A2570 details

Gene Information

• Locus tag: VC0395_A2570
• Symbol: prlC
• ID: 5137604
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2718436
• End bp: 2720478
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640534019
• Product: oligopeptidase A
• Protein accession: YP_001218449
• Protein GI: 147673174
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0339] Zn-dependent oligopeptidases

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAACC CACTTCTTAC CTTTACGGAT CTGCCGCCGT TTTCTGCGAT TAAACCGGAG 
CACGTAAAGC CAGCGGTTGA GCAGGCGATA GCGGATTGTC GCCACACCAT AGATAAGGTT 
TTAGCCGAAA ATCCACAACC GAGCTGGGAA AGTGTGATTG CGCCGATTGA AGAGGTCGAT 
GATCGCTTAA GTCGTATCTG GTCACCGGTC AGCCATATGA ATTCGGTGGT GAACAGTGAT 
GAGCTGCGTG AAGCCTACGA AAGCTGCTTA CCGCTGTTGT CCGAGTACAG CACTTGGGTT 
GGTCAGCATA AAGGGCTGTT TGAAGCCTAC AAAACCATTA AAGAGAGCGC GGAGTTTGCC 
AAGCTCGATC GCGCGCAGCA AAAAACCATC AGCGACAGTC TGCGTGATTT TGAATTGTCA 
GGCATCGGCT TGCCACTGCA AGAGCAAAAG CGCTATGGCG AAATCAGTAA GCGTATGTCT 
GAGCTTGGCT CTAAGTTCTC CAACAACGTG CTGGATGCCA CCATGGGGTG GACCAAGCAG 
ATCACCGATG TAAACCTGCT CGCGGGCATG CCGGAATCGG CACTGGCGGC GGCACAAGCA 
GCAGCCGAAG CCAAAGGTTT AGAGGGGTAT CTGCTGACCT TGGATATTCC GTCTTATCTA 
CCAGTGATGA CTTACTGTGA TAACCAAGCA CTGCGCAAAG AAGTGTATGA AGCGTATGTC 
ACGCGCGCTT CGGATCGCGG CCCGAATGCG GGTAAATGGG ATAACAGCGA AATCATTGCT 
GAGCAGCTCA AACTGCGCCA TGAGATCGCG CGTATGCTCG GCTTTAGCAC TTACAGCGAA 
AAATCGCTGG CGACCAAAAT GGCGCAAACC ACTGACCAAG TGCTTGGTTT CTTAAATGAT 
CTCGCCAACA AAGCCAAACC ACAAGGTGAG CGTGAAGTGG AAGAGCTGCG CCAATTTGCC 
GAAAGTGAGT TTGGCGTCAA GCAGCTTGAG CTGTGGGATA TTGCTTACTA CAGCGAAAAG 
CAAAAGCAGC ATCTGTTTGA AATCTCCGAT GAAGAGCTGC GCCCTTACTT CCCAGAACAA 
AAAGTAGTGA ATGGCCTGTT TGAAGTGCTG AGCCGTTTGT TTGGCATGCA AGTCAAAGAG 
CGCCAAGGGG TAGATGTATG GCACGAATCG GTGCGCTTTT TTGATATTTT TGATGCGCAA 
GGAACGCTGC GTGGCAGCTT CTATCTCGAC CTGTATGCGC GTGAACACAA ACGCGGTGGC 
GCGTGGATGG ATGAGTGTCG TGTACGTCGC ACTACCGACA GTGGCGCACT GCAAACACCA 
GTGGCTTACC TGACGTGTAA CTTCAACCGC CCAGTCGGCG ATAAGCCTGC GCTGTTTACC 
CACGACGAAG TGACGACTCT GTTCCACGAA TTTGGTCACG GCATTCACCA TATGCTGACG 
CAAGTGGAAG TGGGCGCGGT ATCCGGCATC AATGGTGTGC CTTGGGATGC AGTCGAGCTG 
CCAAGCCAAT TCTTGGAAAA CTGGTGCTGG CAAGAAGAGG CGCTGGCGTT CATTTCTGGT 
CATTACCAAA CGGGTGAGCC ACTGCCGAAA GCCATGCTCG ATAAAATGCT GGCGGCGAAA 
AACTTCCAAT CGGCGATGTT TATTCTGCGT CAGTTGGAGT TCGGATTGTT CGACTTCACG 
CTGCACACCA CTTACGACCC AGAAGTGGGG CCCAAAGTGC TGGAAACCTT GGCGGAAGTG 
AAAAAGAAAG TAGCAGTGCT GCCGGGCTTG GAGTGGAACC GCTTCTCGCA CAGCTTTAGC 
CATATTTTTG CGGGTGGCTA CAGCGCCGGT TACTACAGCT ACTTGTGGGC AGAAGTGCTT 
TCGGCGGATG CATTCTCACG CTTTGAAGAA GAAGGCATTT TCAACCGTGA GACTGGCCAA 
AGCTTCCTCA ACAACATCCT TGAGATGGGT GGCAGCGAAG AGCCGATGGA GCTGTTTAAG 
CGCTTCCGTG GCCGCGAACC ACAAATTGAT GCTCTGTTGC GTCATGCCGG AATCGCCGCG 
TAA 

 

Protein sequence

MSNPLLTFTD LPPFSAIKPE HVKPAVEQAI ADCRHTIDKV LAENPQPSWE SVIAPIEEVD 
DRLSRIWSPV SHMNSVVNSD ELREAYESCL PLLSEYSTWV GQHKGLFEAY KTIKESAEFA 
KLDRAQQKTI SDSLRDFELS GIGLPLQEQK RYGEISKRMS ELGSKFSNNV LDATMGWTKQ 
ITDVNLLAGM PESALAAAQA AAEAKGLEGY LLTLDIPSYL PVMTYCDNQA LRKEVYEAYV 
TRASDRGPNA GKWDNSEIIA EQLKLRHEIA RMLGFSTYSE KSLATKMAQT TDQVLGFLND 
LANKAKPQGE REVEELRQFA ESEFGVKQLE LWDIAYYSEK QKQHLFEISD EELRPYFPEQ 
KVVNGLFEVL SRLFGMQVKE RQGVDVWHES VRFFDIFDAQ GTLRGSFYLD LYAREHKRGG 
AWMDECRVRR TTDSGALQTP VAYLTCNFNR PVGDKPALFT HDEVTTLFHE FGHGIHHMLT 
QVEVGAVSGI NGVPWDAVEL PSQFLENWCW QEEALAFISG HYQTGEPLPK AMLDKMLAAK 
NFQSAMFILR QLEFGLFDFT LHTTYDPEVG PKVLETLAEV KKKVAVLPGL EWNRFSHSFS 
HIFAGGYSAG YYSYLWAEVL SADAFSRFEE EGIFNRETGQ SFLNNILEMG GSEEPMELFK 
RFRGREPQID ALLRHAGIAA