Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2564 |
Symbol | |
ID | 5136450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2710938 |
End bp | 2712566 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640534013 |
Product | peptide ABC transporter, periplasmic peptide-binding protein |
Protein accession | YP_001218443 |
Protein GI | 147674667 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0172077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGGTTGGC GATTGTTACA AAAGCAAATA CAACAAACTA GGGATCTGGA TTCCCGCATA AGGAGTTATG CAATGAAAAC CATGAAAAAC AAACTGGCGT TGGCTTTGAT AGCGACTGGC TTGAGTTTTG GTGCGATGGC AGCGGATATT ACCGTGGCTT ACGACGCTGA CCCGGTCTCA ATGGACCCAC ATGAGCAGCT GTCAGGCGGT ACTCTGCAAC TGTCGCACAT GGTCTTTGAT CCACTTATTC GCTTTACACA AAAAATGGAA TTTGAACCTC GTCTGGCCGA ATCTTGGCAG CGTGTGGATA ACGAAACCAT GCGTTTCACT TTGCGCAAAG GCGTGAAGTT CCACTCTGGC AATGATTTTA CCGCGGATGA TGTGGTATGG ACGTTCAATC GTTTGAAAGA ATCGGCGGAT TTTAAAGGGA TTTTTGAACC TCTGGTCTCT TTGACTAAGG TGGATGATTA CACCATCGAA ATCAAAACGG CTGGCACTTA CCCGCTGATT GAAAACGTGG CGACCTACAT TTTCCCGATG GACAGCAAGT TCTACACCGG CACCACGGCG GATGGTAAAA ACAAAGCAGA AATAGTTAAG CACGGTAACT CTTTCGCCTC TGAAAACATC TCTGGTACCG GGCCATTTAC GGTGACGGCT CGTGAGCAAG GCGTGAAACT TGAGTTCCAA CGCAACCCTA ATTACTGGGA TAAAGCGTCG AAAGGCAATG TGGACAAACT GACGCTGGCG GTGATTAAAG AAGATGCCAC TCGTGTTGCG GCACTGCTGT CTGGCGGTGT GGATATGATT GCGCCGGTTT CACCGAATGA TTACCAACGC ATCAAAGATG CGAAAGGCGT GGATCTCTTC ACTATGCCGG GCACTCGCGT GATTACCTTC CAAATGAACC AAAATAGCAA CCCAGCGTTG AAAGATGTGC GTGTGCGTCA AGCGATTGTC TACGCCATCA ACAACGAAGG GATTGTGGAT AAGGTCATGA AAGGGGCGGC TACCACGGCT GCGCAGCAAA GCCCAGTCGG TTATGCCGGT TACAATGAGA ACCTAAAACC ACGCTTTGAT CTCAACAAAG CGAAAGAGCT GATGAAAGAA GCAGGTTATG AGAAAGGCTT CAACCTGACC ATGATCGCGC CAAACAACCG TTACGTGAAC GATGAAAAGA TCGCGCAAGC GGCATCGGCG ATGTTGTCAA AAATCGGTAT TAAAGTTGAC CTAAAAACCA TGCCAAAAGC GCAATACTGG CCTGAGTTTG ATAAATGTGC GGCAGATATG CTGATGATTG GTTGGCACCC AGATACCGAA GACTCAGCAA ACTTTACTGA GTTCCTGACC ATGACCCGTG ATTCAAATAC GGGTAAAGGC CAGTACAACT GTGGTTACTA CTCGAATGCG GAAGTCGATA AGTTAGTCAA TGCCGCGAAC GAGGAAACCG ATCTAGAAAA ACGCAGCACC ATGCTGAAGA AAGTGGAAGA GATCCTGTAT AACGAAGCGG CGTTTGTGCC TCTTCACTTC CAAGATCCGT CATGGGCCGC GAAAAATACG CTCGATATCG CACCTATCAT CAACGGTATG GACTTCCCAT ACTTTGGCGA TCTGGTGGTG AAAGAGTAA
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Protein sequence | MGWRLLQKQI QQTRDLDSRI RSYAMKTMKN KLALALIATG LSFGAMAADI TVAYDADPVS MDPHEQLSGG TLQLSHMVFD PLIRFTQKME FEPRLAESWQ RVDNETMRFT LRKGVKFHSG NDFTADDVVW TFNRLKESAD FKGIFEPLVS LTKVDDYTIE IKTAGTYPLI ENVATYIFPM DSKFYTGTTA DGKNKAEIVK HGNSFASENI SGTGPFTVTA REQGVKLEFQ RNPNYWDKAS KGNVDKLTLA VIKEDATRVA ALLSGGVDMI APVSPNDYQR IKDAKGVDLF TMPGTRVITF QMNQNSNPAL KDVRVRQAIV YAINNEGIVD KVMKGAATTA AQQSPVGYAG YNENLKPRFD LNKAKELMKE AGYEKGFNLT MIAPNNRYVN DEKIAQAASA MLSKIGIKVD LKTMPKAQYW PEFDKCAADM LMIGWHPDTE DSANFTEFLT MTRDSNTGKG QYNCGYYSNA EVDKLVNAAN EETDLEKRST MLKKVEEILY NEAAFVPLHF QDPSWAAKNT LDIAPIINGM DFPYFGDLVV KE
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