| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2552 |
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| Symbol | |
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| ID | 5137859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2700090 |
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| End bp | 2703200 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640534001 |
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| Product | putative multidrug resistance protein |
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| Protein accession | YP_001218436 |
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| Protein GI | 147674069 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000475921 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTTA CTGATGTTTT TATAAAACGT CCAGTTTTAG CGGTATCGAT CAGCTTTTTG
ATTGTGTTGC TTGGTCTACA AGCCATTTTC AAAATGCAGG TGCGTGAATA CCCTGAAATG
ACCAACACCG TAATTACGGT GAGCACCGGC TATTACGGTG CCAGTGCCGA TTTGATTCAA
GGTTTTATTA CTCAACCCTT GGAACAAGCG GTAGCACAGG CGGATAACAT TGATTTTATG
ACGTCACAGT CCGTGTTGGG TCGCTCGACC ATCACAGTGA CCATGAAATT GAATACGGAT
CCCAACGCCG CGTTATCTGA CGTTCTGGCC AAGACCAACT CGGTTCGCTC GCAGTTGCCT
AAAGAAGCAG AAGATCCGAC CGTCACTATG TCGACCGGTT CAACCACTGC GGTTCTGTAT
ATTGGTTTCA CCAGTAATGA ATTGGCATCC AGCCAAATCA CTGATTACCT AGAGCGCGTG
GTTAATCCAC AGCTTTACGC AGTCAATGGT GTATCAAGTA TCGATCTGTA TGGCGGTATG
AAATACGCGC TCCGGGTATG GCTCGATCCA GCCAAAATGG CGGCACTAAA CCTCTCCGCA
GCGGATGTGA TGAGCATTCT GAATGCCAAC AACTATCAGT CAGCGACCGG TCAGGCGATT
GGTGAATTCG TTCTTTATAA TGGCAGCGCC GATACCCAAG TCTCCACCGT GGAAGATTTG
GAAAGTCTGG TGGTGAAAGC TGAGAAAGGT ACCGTGACTC GCCTAGGTGA TATCGCGAAA
GTTACCTTGG CTAAGAGCCA TGATACCTAT CGCGCGAGTG CTAATGGCCG TGAAGCGGTC
GTTGCCGCGA TTAATGCGGC CCCAAGTGCG AACCCTATCA ACATCGCCAA AGATGTGCTT
GAGATGCTCC CTGAGCTGCA GAAAAACATG CCAAGCAACA TTGAAATGAA CGTGTTGTAC
GACTCAACGG TTGCGATCAA TGAATCGATC CACGAGGTTA TCAAAACCAT CGTAGAAGCG
GCGCTGATCG TTCTTGTGGT CATCACTCTG TTCTTGGGTT CACTGCGTGC CGTACTCATC
CCAATTGTCA CTATCCCGCT TTCACTGATT GGTGTTGCGA TGGTGATGCA GATGATGGGC
TTCTCTTGGA ACCTAATGAC GCTACTGGCG ATGGTTCTGG CGATCGGTCT TGTGGTTGAC
GATGCGATCG TCGTTCTAGA GAACGTTGAC CGCCATATCA AAGAAGGGGA ATCCCCTTTC
CGCGCGGCGA TCATCGGTAC CCGTGAAATT GCCATCCCAG TTATTGCGAT GACACTGACG
TTGGGTGCGG TCTATGCGCC GATTGCTTTG ATGGGCGGTA TCACCGGCTC ACTGTTTAAA
GAGTTTGCGC TCACACTGGC TGGTTCTGTT TTTGTATCCG GTATTGTTGC ATTGACTCTG
TCGCCGATGA TGTGTTCAAA GATGCTCAAA GCCAATGAAG CGCCGAACAA ATTTGAACTG
AAAGTGCACC ATTTACTGGA TCGCATGACG GCACGCTATG AACGCATGCT GACCGCGGTA
ATGGCTCATC GCCCTGTGGT TATTGCCTTT GCGTTTATCG TTTTTGCAAG TTTACCAATG
CTGTTTAAGT TCATTCCAAG TGAGCTTGCG CCATCGGAAG ATAAAGGGGT AATCATGCTG
ATGGGTACAG GCCCGTCGAA TGCCAACCTC GATTATCTGG CGAATACGAT GGATGATGTG
AATAAAATTC TGTCTGATCA GCCAGAAGTT CAGTTCGCTC AGGTGTTTAC TGGTGTTCCT
AACTCAAACC AGGCGTTTGG TATTGCGTCA ATGGTGCCAT GGAGCCAGCG TGAAGCTAGC
CAAGCCACAG TAACCAACCG CGTGGGTACC TTGGTACAAG ATATCCCAGG TATGGCGGTA
ACGGCATTCC AGATGCCAGA ACTGCCTGGT GCAGGCTCTG GCTTACCGAT CCAATTTGTG
ATCACCACGC CAAGCAACTT TGAAAGCTTG TTTACCATCG CCACCGATGT GCTGACCGAA
GTCAAAGCCA ATCCGATGTT CGTCTACTCG GATCTGGATC TGAACTTCGA TTCGGCAACG
ATGAAGATCA ATATCGATAA AGATAAAGCC GGTGCCTACG GCGTGACCAT GCAAGATATT
GGCATCACGC TCAGCACCAT GATGGCCGAC GGTTATGTCA ACCGTATCGA CCTCAACGGC
CGCTCTTACG AAGTGATCCC GCAAGTGGAA CGTAAATGGC GTCTCAACCC TGAATCGATG
AACAGCTACT ACGTTCGCGC GGCAGATGGC AAAGTGATCC CACTCGGTAG CCTAGTGACG
ATTGATGTGG TTGCAGAGCC TCGCTCGCTA CCCCACTTCA ACCAGCTCAA CTCTGCCACC
GTAGGTGCGG TGCCAGCACC GGGCACGGCT ATGGGGGATG CCATCAACTG GTTTGAGAAT
TTGGCAAGCA GCAAACTGCC TAAAGGCTAT AGCCATGACT ACATGGGTGA AGCTCGTCAG
TATGTGACCG AAGGTAGCGC GCTGTATGCC ACATTTGGCC TAGCGTTGGC GATCATCTTC
TTGGTGTTGG CGATTCAGTT TGAATCTCTC AGAGATCCTT TGGTTATCAT GGTCTCTGTA
CCACTCGCCA TTTGTGGTGC CTTGATCGCA CTGGCTTGGG GTACGGCAAC CATGAACATC
TACTCGCAGG TTGGCTTGAT CACACTGGTC GGCCTTATCA CTAAACACGG TATTTTGATC
TGTGAAGTGG CCAAAGAGGA GCAGTTACAC AACAAACTCA GCCGGATTGA GGCTGTCATG
CATGCCGCTA AAGTGCGTCT GCGCCCAATC CTAATGACCA CTGCAGCAAT GATCGCAGGC
CTGATCCCAC TGATGTACGC CACCGGTGCA GGGGCTGCGC AGCGCTTCAG TATCGGTATT
GTTATCGTCT CTGGTCTGGC AATAGGTACC TTGTTTACTC TGTTTGTACT GCCGGTGATT
TACAGCTACC TTGCAGAGAA ACACAAACCA CTACCGGTGT TTGTTGAGGA TAAAGATCTG
GAGAAATTGG CCCGCATTGA TGAAGCCAAA GCGGCTCATC GTCAGCTGTA A
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| Protein sequence | MRFTDVFIKR PVLAVSISFL IVLLGLQAIF KMQVREYPEM TNTVITVSTG YYGASADLIQ
GFITQPLEQA VAQADNIDFM TSQSVLGRST ITVTMKLNTD PNAALSDVLA KTNSVRSQLP
KEAEDPTVTM STGSTTAVLY IGFTSNELAS SQITDYLERV VNPQLYAVNG VSSIDLYGGM
KYALRVWLDP AKMAALNLSA ADVMSILNAN NYQSATGQAI GEFVLYNGSA DTQVSTVEDL
ESLVVKAEKG TVTRLGDIAK VTLAKSHDTY RASANGREAV VAAINAAPSA NPINIAKDVL
EMLPELQKNM PSNIEMNVLY DSTVAINESI HEVIKTIVEA ALIVLVVITL FLGSLRAVLI
PIVTIPLSLI GVAMVMQMMG FSWNLMTLLA MVLAIGLVVD DAIVVLENVD RHIKEGESPF
RAAIIGTREI AIPVIAMTLT LGAVYAPIAL MGGITGSLFK EFALTLAGSV FVSGIVALTL
SPMMCSKMLK ANEAPNKFEL KVHHLLDRMT ARYERMLTAV MAHRPVVIAF AFIVFASLPM
LFKFIPSELA PSEDKGVIML MGTGPSNANL DYLANTMDDV NKILSDQPEV QFAQVFTGVP
NSNQAFGIAS MVPWSQREAS QATVTNRVGT LVQDIPGMAV TAFQMPELPG AGSGLPIQFV
ITTPSNFESL FTIATDVLTE VKANPMFVYS DLDLNFDSAT MKINIDKDKA GAYGVTMQDI
GITLSTMMAD GYVNRIDLNG RSYEVIPQVE RKWRLNPESM NSYYVRAADG KVIPLGSLVT
IDVVAEPRSL PHFNQLNSAT VGAVPAPGTA MGDAINWFEN LASSKLPKGY SHDYMGEARQ
YVTEGSALYA TFGLALAIIF LVLAIQFESL RDPLVIMVSV PLAICGALIA LAWGTATMNI
YSQVGLITLV GLITKHGILI CEVAKEEQLH NKLSRIEAVM HAAKVRLRPI LMTTAAMIAG
LIPLMYATGA GAAQRFSIGI VIVSGLAIGT LFTLFVLPVI YSYLAEKHKP LPVFVEDKDL
EKLARIDEAK AAHRQL
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