Gene VC0395_A2535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2535 
Symbol 
ID5137296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp2688363 
End bp2688995 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content48% 
IMG OID640533986 
Producthypothetical protein 
Protein accessionYP_001218428 
Protein GI147673536 
COG category[S] Function unknown 
COG ID[COG1739] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00257] uncharacterized protein, YigZ family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.000701111 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCTTC ATCCCTACCT CATTCCCATG GCTTCTGTTC GGTTTGAAGA AGAGATTAAA 
AAGAGTCTGT TTATTACCTA TTTGGCACAT ACGCCAGATC TTGCCAGTGC CAAAGCGTTT 
GTTGATGAGA TTAAGCAGCG TCATGCGGAT GCGAGACACA ACTGCTGGGC GTTTGTGGCT 
GGGCGACCTG AAAACTCCAT GCTGTGGGGA TTGAGTGATG ATGGTGAGCC ATCCGGTACT 
GCGGGAAAAC CCATCTTGGC TCAGCTCACG GGGTCTCATA TCGGCGAAAT TACGGCGGTA 
GTGACCCGTT ATTATGGCGG TGTTCTATTG GGAACCGGTG GCTTAGTGAA AGCGTATGGT 
GGCGGTGTGC AACAAGCGCT CAAGCGACTT CAAACTATTG AGAAAAAAAT CACCACATCT 
GTGCACCTGA CGCTAGACTA CGCCATGATT CCATTACTCC ATTCCATAAT GGCGCAATTT 
TCTGCGACGG AAATGGAGGC TCACTATAAT GAACAAGTCG AAATGGTGGT GGAATTAGAG 
GCATTGCAAT CAGATGCTTT CACACAAGCC TTGATCAATA AAAGTGGCGC GAAAATACAG 
GTGAGTCGCT CACCACAACA TAGTCAGAAT TAG
 
Protein sequence
MNLHPYLIPM ASVRFEEEIK KSLFITYLAH TPDLASAKAF VDEIKQRHAD ARHNCWAFVA 
GRPENSMLWG LSDDGEPSGT AGKPILAQLT GSHIGEITAV VTRYYGGVLL GTGGLVKAYG 
GGVQQALKRL QTIEKKITTS VHLTLDYAMI PLLHSIMAQF SATEMEAHYN EQVEMVVELE 
ALQSDAFTQA LINKSGAKIQ VSRSPQHSQN