Gene VC0395_A2477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2477 
SymboltrkH-1 
ID5136136 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2628780 
End bp2630225 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content51% 
IMG OID640533928 
Productpotassium uptake protein TrkH 
Protein accessionYP_001218370 
Protein GI147673732 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCAACT TACGCCCAAT TACGTTTATC ATCGGGCTAG TGCTGTCTAA GCTAGCCCTA 
TTCATGTACG TGCCGACTCT AGTGGCATTT TTTACTGGCA GCGGCGGTTT TCTCGATTTC
GCGCAAGCCG TCATCATTAC CCATCTGGTG GCGTTTCTCT GCTTAAGTAT CGGTCGCACT
GAACATTTTC GGCTCAACGT ACGTGATATG TTCCTGATCA CCAGCTTGGT ATGGACGATT
GCCAGCGCAT TTGCTGCTCT GCCTTTTGTG TTTATTAACC ACATCAGCTT TACCGATGCC
TATTTTGAAA CCATGTCCGG CCTTACCACC ACAGGCTCCA CGGTACTCAG TGGCTTAGAT
GATATGCCGC CCAGTATTTT GTTGTGGCGC TCCATTTTGC AATGGTTAGG TGGCGTGGGC
TTTATCGTGA TGGCGGTAGC GGTGTTGCCG ATGCTCAATG TTGGGGGGAT GAAGCTGTTC
CAAACCGAAT CGTCTGATTG GTCGGATAAA AGCAGCCCGC GCGCGAAAAC CGTCGCGAAA
AACATTGTGG CGGTGTATCT GGTTTTGACT GGGCTCTGTT TTTTGAGCTA TATCGCCACA
GGTATGACGC CGTTTGAAGC GATTAATCAC GCCTTTACCA CGCTTTCCAC CGGCGGCTAC
TCGACCAGTG ATAGCTCGAT GAACCGCTTC TCACACGGCG CGCACTGGGT TGGCACACTC
TTTATGTTTC TTGGTGGCCT GCCATTTTTA CTGTTTGTGC AGGCTCTGCG CAAACAGAGT
GCACGAGCCC TACTCAAAGA TGAGCAGGTA CGCGGCTTCT TCTGGCTCTT TATGATCTCC
AGTTTGCTGG TCGCAGGTTG GTTGTGGCTC AAAAACGATT ACGCGATATT GGATGCGCTG
CGAGTTTCGA TGTTTAACAT TGTCTCCGTC GTCACAACCA CGGGCTATGG TCTGGATGAT
TTCACCGCGT GGGGCGCGCT CCCCTCAACC ATTTTTGCCT TCCTATTGAT GGCCGGCGCT
TGCTCGGGTT CTACCTCTGG CGGAATTAAG GTCTTTCGTT TCCAAATCGC GATGGCACTG
CTCAAAAAGC AACTGCTGAA CCTCATCCAC CCTTCTGGCA TTTTTATCCA GCGCTATAAC
AAGCGCCCGG TCAATGAAGA GATCATCCGC TCCGTAGTCG CCTTTGGCTT GACGTTTTTC
ATCACTATCG TGGTACTGGC TGGCGCGTTA TCGGCAATGG GATTGGATTC GGTGACCAGT
ATCTCTGGCG CGGTCACTGC CGTGGCTAAC GTGGGTCCAG GTATGGGCAG CATCATTGGC
CCAACGGGTA ACTTTGCCCC TCTACCGGAT GCCGCCAAAT GGCTCTTGAG CTTTGGAATG
TTGATGGGAC GTTTAGAAAT TCTGACGATT TTGGTGCTCT TTTTCCCTGC ATTCTGGCGT
CATTAA
 
Protein sequence
MLNLRPITFI IGLVLSKLAL FMYVPTLVAF FTGSGGFLDF AQAVIITHLV AFLCLSIGRT 
EHFRLNVRDM FLITSLVWTI ASAFAALPFV FINHISFTDA YFETMSGLTT TGSTVLSGLD
DMPPSILLWR SILQWLGGVG FIVMAVAVLP MLNVGGMKLF QTESSDWSDK SSPRAKTVAK
NIVAVYLVLT GLCFLSYIAT GMTPFEAINH AFTTLSTGGY STSDSSMNRF SHGAHWVGTL
FMFLGGLPFL LFVQALRKQS ARALLKDEQV RGFFWLFMIS SLLVAGWLWL KNDYAILDAL
RVSMFNIVSV VTTTGYGLDD FTAWGALPST IFAFLLMAGA CSGSTSGGIK VFRFQIAMAL
LKKQLLNLIH PSGIFIQRYN KRPVNEEIIR SVVAFGLTFF ITIVVLAGAL SAMGLDSVTS
ISGAVTAVAN VGPGMGSIIG PTGNFAPLPD AAKWLLSFGM LMGRLEILTI LVLFFPAFWR
H