Gene VC0395_A2473 details

Gene Information

• Locus tag: VC0395_A2473
• Symbol: def
• ID: 5137198
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2624520
• End bp: 2625029
• Gene Length: 510 bp
• Protein Length: 169 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640533924
• Product: peptide deformylase
• Protein accession: YP_001218366
• Protein GI: 147673376
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 46
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGTAT TGCAAGTATT AACATTCCCA GATGATCGAC TGCGTACCGT TGCGAAACCG 
GTCGAACAAG TCACCCCAGA AATCCAACAA ATCGTCGATG ATATGTTGGA AACCATGTAT 
GCCGAAGAAG GCATCGGTTT AGCGGCGACC CAAGTCGATA TTCACCAACG TATCGTGGTG 
ATCGATATTT CTGAAACTCG CGATCAGCCT ATGGTGTTGA TTAACCCAGA GATCATCGAA 
AAGCGCGGTG AAGATGGCAT TGAAGAAGGC TGTTTGTCCG TCCCGGGTGC GCGGGCTTTA 
GTGCCTCGCG CCGCAGAAGT GACCGTAAAA GCGCTGGATC GCAATGGTCA AGAGTACCAG 
TTTGATGCAG ATGACCTACT GGCTATCTGT GTACAGCACG AACTCGATCA CCTCGCGGGC 
AAACTGTTTG TTGACTATCT GTCACCACTC AAACGCAACC GCATCAAAGA GAAGCTAGAG 
AAAATCAAAC GCTTCAATGA GAAAAAATAA 

 

Protein sequence

MSVLQVLTFP DDRLRTVAKP VEQVTPEIQQ IVDDMLETMY AEEGIGLAAT QVDIHQRIVV 
IDISETRDQP MVLINPEIIE KRGEDGIEEG CLSVPGARAL VPRAAEVTVK ALDRNGQEYQ 
FDADDLLAIC VQHELDHLAG KLFVDYLSPL KRNRIKEKLE KIKRFNEKK