| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2389 |
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| Symbol | |
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| ID | 5137437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2543017 |
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| End bp | 2545506 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533841 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001218289 |
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| Protein GI | 147674826 |
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| COG category | [S] Function unknown
[T] Signal transduction mechanisms |
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| COG ID | [COG3287] Uncharacterized conserved protein
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTACGG TCTCGCGTCT CATCCCAGAT TTAGCATCGG CCAATCAGGT GCTCGAAACG
ATGGATCTTC CTCATGGGCA ATCCATCTTA GTGCAAATTT TCTCTCCTTT GAGTCGCGAG
CATGTCGTGC AGCTTGCGCG GCTCATCCGT AGTCGCCATC CACAAGCTTG CCTGCTTGGA
TGCAGTACCG AAGAGGTGAT TTTCCAAGGG GAAGTGCACC ATCAGGTGAC GTTGCTGCAA
ATCACCGTGT TTGAGCAAAC TTATCTTAGC CGTGCTGTTG TGGATTACAG TGACGATGAG
GCTGCCGACG CGGAGCGTTT AGCTCGCCAG CTCGAGCTCA CTAGCATGTC TCGAGCAGTG
GTCTGTTTTT CTTGGCAGAT GGATACCTTG CAAGTCGCAC GATTTGCCTT ACGCGACACG
CAGGGTGCAC CAGTGCCCGT CGCTGGTGGA GCCGCCAAAC AAACTCCCAG TGGTCGCTGG
GTTTTGCTCG ATGAGGCTTG TTATCAAAAC GCCAGTGTGG CTATTGCGCT GCATGGCGAA
GCGCTTTATG TCGAGACGGG TGGTTACACT GAGTGGCAGC CTGTTGGGCG CACCTATCGG
GTCACAGCCG TGGAGGGAGA TCGGGTCTTA CGTTTGGATG ATGAGCCGAT AGAGGCGATT
TATCAGCACA ATTTGGGCGC GCAAGCCGAC TTACCCCATG ACTGGCTGAT CAGTTTTCCA
CTGATGAAAG GGGAATGCCG CCACCAAGAT CTTTATCTGC CGCTCGGGCT GGCGGAGGAA
GGCGGACTGA GGTTTAACCG CCCACTGGCG CTGCAAGATG AAGTGCGCTT TTGTTTTGAT
CACCCGAGTT TAACCCTAGA GCGGGTCTAT CTCACCGCGC AGCAACTACA AGCCAAGCAG
TGCCAACAAG TGTGGGTGTT TAACTGTGCG CTGCGTTTAA ACTTCATGCA TGAGAATCAC
GAGTTACAAC CGCTTCAGGC GGTGGCGCCG ACCGATGGTT GTTACTGTTG GGGAGAGCTG
CTGTATGAGC ATGGTCAGCA GCAAGTGATG CATCATAGCA TGACGTTTCT TGCCTTGCGT
GAAGGGGCGG TGCGTGACGA TCTTGTCCCA ATCCCCTTGC CGAGTTATCC GGAAGGGATG
ACGTCCCCTC TGTTTAATTT GATCCGCCAT GCGTTTCATG ATTTGGATGC CATGACGGAC
AATTTGGCAC AGCAGATCCG CGCTCAAACC TCATTACTGA CGGCGAGTTA CCGGCGTGAC
CGACGTACCG GCTTACCCAA TCGAGTGGTG TTACGTGAGC GATTGGCGAA CTTCGCGGCC
AATGAGCACC TAATCGCCCT GAAAGTGACC AACTTCAATC AGATCAATGA GAAGTACGGT
TATCCGGTAG GCGATAAGCT GCTTCGTGAT TTGAGTGAAC AGTTTCAGGT CTTTTTGGAT
CAGAAATTGG CAGGGCAGAG CGGTTTGTAT GCGATTGGGG TCGGTGAGTG GGCAACGGTT
TTTCGTGCCA AGCTGGACGG GAAAAGTATT CATAGCCATT TCTATCAGTT TGTGGAGCAG
TTGGAGCACG TCAACTTCGA GCCCTACGGT TTACCGAATG TGGATTATCT GTCGATCTCG
TTGTGCGCTG GGTTAGTCAG TCAGGGCGAT TTTGCAGAGC ATTCGCCGGA TGAGCTATTG
CTGCGTGCTA TCGAAGCACG CCGCTACGCG TTTAACAACA ACCACCATTT CTGTAATGCA
GCGCGTTTAA AAGTGCAAGA AAGTGTTCGT CAGGAGCGGC TGAATTGGCT ATCGCGGGTT
AGCCGCGCGG TGGTACGTGA TGATGTGGTG GTTTATGCGC AGCCGATTTG TCAGGCGCGT
AGTCACATTG TGGCTTCCTA CGAATGTTTA GTGCGGATTG AAGATGAAGG GGAAATTATC
TTGCCTGGGA ATTTTCTCCC GATCATCACC GATACTCACC TCTATACTCG TTTGAGCCGG
CAGATGATAA CGCATACCTT CAATATGATG CGTCATCGCC CGGAGGCGTT TTCGATCAAT
CTTTCACCGC AAGATTTGAT GAGTGAGCGC ACCTTGCAGC ATTTGGAAGC GGCAATCAAA
TCGGTGGCCG ATCCCGCCCG TGTCGGGCTC GAAGTGTTGG AGAGCGAACA AATCAAAGAT
TACGGGCGGA TGATTGAAGT GTGTAACCAT TTCCGCACAC TGGGCGCGAC CATCATTGTC
GATGATTTTG GCAGTGGTTA TTCCAATATT GATGAGATAG TGAAGCTTGA GCCGCAGGTG
ATTAAGCTCG ATGGCAGCTT GATCCGCAAT ATTGATCAGG ATGTGAAGCA GCGCCGGATT
GCCGAGCAGC TCGTGAAATT GTGTCAGGTA CTGAATGCGA AAACCGTGGC GGAGTTTGTC
CATAACCAGA CGGTTTGTCG CATCAGTGAA GATATGGGTG TGGATTATTT ACAAGGCTAT
TTCTTGGGTC GACCTTCACG CTTGGGTTAA
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| Protein sequence | MFTVSRLIPD LASANQVLET MDLPHGQSIL VQIFSPLSRE HVVQLARLIR SRHPQACLLG
CSTEEVIFQG EVHHQVTLLQ ITVFEQTYLS RAVVDYSDDE AADAERLARQ LELTSMSRAV
VCFSWQMDTL QVARFALRDT QGAPVPVAGG AAKQTPSGRW VLLDEACYQN ASVAIALHGE
ALYVETGGYT EWQPVGRTYR VTAVEGDRVL RLDDEPIEAI YQHNLGAQAD LPHDWLISFP
LMKGECRHQD LYLPLGLAEE GGLRFNRPLA LQDEVRFCFD HPSLTLERVY LTAQQLQAKQ
CQQVWVFNCA LRLNFMHENH ELQPLQAVAP TDGCYCWGEL LYEHGQQQVM HHSMTFLALR
EGAVRDDLVP IPLPSYPEGM TSPLFNLIRH AFHDLDAMTD NLAQQIRAQT SLLTASYRRD
RRTGLPNRVV LRERLANFAA NEHLIALKVT NFNQINEKYG YPVGDKLLRD LSEQFQVFLD
QKLAGQSGLY AIGVGEWATV FRAKLDGKSI HSHFYQFVEQ LEHVNFEPYG LPNVDYLSIS
LCAGLVSQGD FAEHSPDELL LRAIEARRYA FNNNHHFCNA ARLKVQESVR QERLNWLSRV
SRAVVRDDVV VYAQPICQAR SHIVASYECL VRIEDEGEII LPGNFLPIIT DTHLYTRLSR
QMITHTFNMM RHRPEAFSIN LSPQDLMSER TLQHLEAAIK SVADPARVGL EVLESEQIKD
YGRMIEVCNH FRTLGATIIV DDFGSGYSNI DEIVKLEPQV IKLDGSLIRN IDQDVKQRRI
AEQLVKLCQV LNAKTVAEFV HNQTVCRISE DMGVDYLQGY FLGRPSRLG
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