Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2384 |
Symbol | rhtB |
ID | 5136813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2537913 |
End bp | 2538530 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640533836 |
Product | homoserine/homoserine lactone efflux protein |
Protein accession | YP_001218284 |
Protein GI | 147675050 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 65 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATATCC ATGTTTGGCT TGCCTATCTA CTGACCGCGG TGGTGTTTAG TCTGGCGCCC GGTTCAGGCA CGGTTAACTC GATCAGCAAT GGTTTAAGTT ATGGTACACG CCACTCATTA GGGGCGATTA TCGGCCTACA AATCGGTCTT GCTTGTCATA TAGTGTTGGT CGGCATTGGA ATTGGCGCTT TGGTGGCACA ATCTGCGTTG GCGTTCACTC TGATCAAATG GATTGGCGCG GCTTATTTAG TATGGCTGGG TATTCAGAAA TGGCGAGATA GAGCCCCCCT AACGGCTACC ACAACTTCTC ATGAACTCTC ACAAGCCGCC CTGCTGCGTA AAGCAGTACT GATTAACCTG ACCAATCCCA AATCAATCGT TTTCTTAGTG GCATTATTTC CGCAGTTTAT TGATCCCACT AGAGATCATT GGCCGCAGTT CTTGGTTCTG GGTATCACAA CCGTTACTAT TGATGCGATT GTCATGTTCG GATACACGGC ACTGGCTGCG CAGCTAGGTC GCTATATTCG TTCACCTAAC ATAATGACCA GAATGAATAA ACTGTTTGGT TCGATGTTTA TGGGCTGCGG AATGCTGTTG GCTACCGCCA AAGCGTAA
|
Protein sequence | MDIHVWLAYL LTAVVFSLAP GSGTVNSISN GLSYGTRHSL GAIIGLQIGL ACHIVLVGIG IGALVAQSAL AFTLIKWIGA AYLVWLGIQK WRDRAPLTAT TTSHELSQAA LLRKAVLINL TNPKSIVFLV ALFPQFIDPT RDHWPQFLVL GITTVTIDAI VMFGYTALAA QLGRYIRSPN IMTRMNKLFG SMFMGCGMLL ATAKA
|
| |