Gene VC0395_A2384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2384 
SymbolrhtB 
ID5136813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2537913 
End bp2538530 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content48% 
IMG OID640533836 
Producthomoserine/homoserine lactone efflux protein 
Protein accessionYP_001218284 
Protein GI147675050 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones65 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATCC ATGTTTGGCT TGCCTATCTA CTGACCGCGG TGGTGTTTAG TCTGGCGCCC 
GGTTCAGGCA CGGTTAACTC GATCAGCAAT GGTTTAAGTT ATGGTACACG CCACTCATTA
GGGGCGATTA TCGGCCTACA AATCGGTCTT GCTTGTCATA TAGTGTTGGT CGGCATTGGA
ATTGGCGCTT TGGTGGCACA ATCTGCGTTG GCGTTCACTC TGATCAAATG GATTGGCGCG
GCTTATTTAG TATGGCTGGG TATTCAGAAA TGGCGAGATA GAGCCCCCCT AACGGCTACC
ACAACTTCTC ATGAACTCTC ACAAGCCGCC CTGCTGCGTA AAGCAGTACT GATTAACCTG
ACCAATCCCA AATCAATCGT TTTCTTAGTG GCATTATTTC CGCAGTTTAT TGATCCCACT
AGAGATCATT GGCCGCAGTT CTTGGTTCTG GGTATCACAA CCGTTACTAT TGATGCGATT
GTCATGTTCG GATACACGGC ACTGGCTGCG CAGCTAGGTC GCTATATTCG TTCACCTAAC
ATAATGACCA GAATGAATAA ACTGTTTGGT TCGATGTTTA TGGGCTGCGG AATGCTGTTG
GCTACCGCCA AAGCGTAA
 
Protein sequence
MDIHVWLAYL LTAVVFSLAP GSGTVNSISN GLSYGTRHSL GAIIGLQIGL ACHIVLVGIG 
IGALVAQSAL AFTLIKWIGA AYLVWLGIQK WRDRAPLTAT TTSHELSQAA LLRKAVLINL
TNPKSIVFLV ALFPQFIDPT RDHWPQFLVL GITTVTIDAI VMFGYTALAA QLGRYIRSPN
IMTRMNKLFG SMFMGCGMLL ATAKA