Gene VC0395_A2316 details

Gene Information

• Locus tag: VC0395_A2316
• Symbol: typA
• ID: 5135386
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2470633
• End bp: 2472462
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640533771
• Product: GTP-binding protein TypA
• Protein accession: YP_001218231
• Protein GI: 147675093
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCACTC CGCAAATTGA AAAATTAAGA AACATCGCGA TTATCGCGCA CGTTGACCAC 
GGTAAGACGA CCTTGGTTGA CAAACTGCTC CAGCAATCCG GCACGTTAGA GTCTCGCGGT 
GATGTTGAAG AGCGAGTCAT GGACTCGAAC GACATTGAAA AAGAGCGTGG TATCACCATT 
TTGGCGAAAA ACACCGCCAT CAACTGGAAT GATTACCGTA TCAACATCGT AGACACCCCA 
GGACACGCGG ACTTCGGTGG CGAAGTTGAG CGTATTATGT CGATGGTAGA CTCAGTGCTG 
CTGATCGTTG ACGCGGTAGA TGGCCCGATG CCACAAACTC GCTTCGTAAC CCAAAAAGCG 
TTTGCACACG GTTTGAAGCC AATCGTTGTG ATTAACAAAA TTGACCGTCC GGGCGCACGT 
CCTGATTGGG TTATGGATCA GGTATTTGAC TTGTTCGACA ACCTAGGTGC GACGGACGAA 
CAGCTTGACT TCCAAGTGGT CTATGCTTCA GCGCTGAACG GTTGGGCAAC TCTGGTTGAA 
GGCGAAACGG GCGAGAACAT GGAACCGCTG TTCCAAGCCA TCGTGGATAA CGTTGCGGCG 
CCACAAGTTG ACCTTGATGG TCCACTGCAA ATGCAAATTT CTCAGCTCGA TTACAGCTCT 
TACGTAGGTG TTATCGGTGT TGGCCGTATC AAACGCGGTA AAGTAAAACC AAACCAACAA 
GTGACCGTTA TCGGTGCGGA TGGTAAGAAG CGTAACGGCA AAATCGGTAC GGTTCTGGGC 
TACCTTGGCC TGCAACGTTC TGAAACTGAC CAAGCCACCG CTGGCGACAT CGTTGCGGTA 
ACTGGTCTGG GTGAGCTGAA AATCTCTGAC ACTATCTGTG ATGTGAATGC TCTAGAAGCG 
CTGCCACCAC TGAGCGTTGA TGAGCCAACC GTAACCATGA CCTTCCAAGT GAACACCTCT 
CCATTCGCGG GTAAAGAAGG TAAGTTCGTG ACTTCACGTA ATATCCTTGA GCGTCTGGAA 
AAAGAGCTGG TACACAACGT AGCACTGCGT GTTGAACAAA CGGAAGATCC AGACAAATTC 
CGTGTTTCAG GCCGTGGTGA ACTTCACCTA TCGATCCTGA TCGAAAACAT GCGTCGTGAA 
GGCTTTGAGC TGGCAGTATC TCGTCCAGAA GTTATTCTGA AGCACGAAGA CGGCCAACTG 
ATGGAACCGT TTGAAACGGT CACCATCGAC GTGCAAGAAG AGCACCAAGG CGGCATCATG 
GAGAAAATCG GCATGCGTAA AGGTGAGCTG AAAGACATGT CTCCAGATGG CAAAGGCCGT 
ATCCGTATGG ATTTTGTGAT GCCTTCTCGT GGTTTGATCG GCTTCCAAAC TGAATTCATG 
ACTCTGACGT CAGGTTCAGG TCTGCTGTAC CATTCATTTG ACCACTACGG TCCACACAAA 
GGCGGCGTAA TCGGTCAGCG TGTAAACGGT GTTCTGGTTT CTAACGGTAC GGGTAAAGCG 
CTAACGAACG CGCTGTTCAA CCTGCAAGAG CGTGGTCGTA TGTTCATTGG TCACGGTGTT 
GAAGTTTACG AAGGTATGGT GATCGGTATT CACAGCCGTG ATAACGACCT GACAGTAAAC 
CCACTGAAAG GTAAGCAACT GACCAACGTT CGTGCTTCGG GTACTGATGA TGCGCAGGTT 
CTAACGCCGC CAATCATTAT GTCTCTTGAG CAAGCTCTGG AATTCATCGA TGACGACGAA 
CTGGTAGAAG TAACGCCAGT GAGCATTCGT ATCCGTAAAC GCTTCCTGAC CGAAAACGAT 
CGTAAGCGTG CTTCTCGTGA TGCGAAGTAA 

 

Protein sequence

MTTPQIEKLR NIAIIAHVDH GKTTLVDKLL QQSGTLESRG DVEERVMDSN DIEKERGITI 
LAKNTAINWN DYRINIVDTP GHADFGGEVE RIMSMVDSVL LIVDAVDGPM PQTRFVTQKA 
FAHGLKPIVV INKIDRPGAR PDWVMDQVFD LFDNLGATDE QLDFQVVYAS ALNGWATLVE 
GETGENMEPL FQAIVDNVAA PQVDLDGPLQ MQISQLDYSS YVGVIGVGRI KRGKVKPNQQ 
VTVIGADGKK RNGKIGTVLG YLGLQRSETD QATAGDIVAV TGLGELKISD TICDVNALEA 
LPPLSVDEPT VTMTFQVNTS PFAGKEGKFV TSRNILERLE KELVHNVALR VEQTEDPDKF 
RVSGRGELHL SILIENMRRE GFELAVSRPE VILKHEDGQL MEPFETVTID VQEEHQGGIM 
EKIGMRKGEL KDMSPDGKGR IRMDFVMPSR GLIGFQTEFM TLTSGSGLLY HSFDHYGPHK 
GGVIGQRVNG VLVSNGTGKA LTNALFNLQE RGRMFIGHGV EVYEGMVIGI HSRDNDLTVN 
PLKGKQLTNV RASGTDDAQV LTPPIIMSLE QALEFIDDDE LVEVTPVSIR IRKRFLTEND 
RKRASRDAK