Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2282 |
Symbol | spoT |
ID | 5135628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2434848 |
End bp | 2436965 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640533738 |
Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
Protein accession | YP_001218198 |
Protein GI | 147675346 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTATCTAT TCGATAGTCT AAAAGACGTT GCCCAAGAAT ACCTCACAGA GCCTCAAATT GAGGCTCTGC GCCAATCTTA TGTGGTAGCC AGAGATGCCC ATGAAGGGCA AACCCGCTCA AGCGGCGAAC CTTATATCAT TCACCCTGTT GCCGTCGCGC GAATTCTCGC CGAGATGCGT CTCGACCTAG AAACGCTACA AGCGGCACTG CTGCATGATG TGATTGAAGA TTGTGATGTC ACCAAAGAAG ACTTAGATGC CCATTTTGGC AGCTCAGTCG CCGAGTTGGT GGACGGGGTG TCTAAGCTCG ATAAGCTCAA ATTTCGCGAT CGCAAAGAGG CGCAGGCGGA AAACTTTCGC AAAATGGTGC TGGCCATGGT GCAGGATATT CGGGTTATCC TAATCAAACT GGCCGACCGC ACGCACAACA TGCGCACCCT CGGTGCACTG CGTCCGGACA AAAAACGCCG CATTGCCCGT GAAACCTTAG AAATTTATGC TCCCCTCGCC CATCGTTTGG GTATCCATAA CATCAAAACC GAACTCGAAG AGTTAGGCTT TGAAGCGCTC TACCCGAATC GTTATCGCGT CCTTAAAGAG GTGGTGAAAG CCGCGCGCGG TAACCGCAAA GAGATGATCC AACGCATCCA CAGTGAAATC GAAGGCCGCT TACAAGAAGT GGGGCTGCCG GCTCGCGTGG TGGGTCGTGA GAAAAACCTG TTCTCCATCT ACAACAAGAT GAAAACCAAA GAGCAGCGCT TTCACACCAT TATGGATATT TACGCGTTTC GGATTGTGGT GGATACCGCA GATACCTGCT ATCGCGTGTT GGGTCAGGTG CATAGCTTGT ACAAGCCGCG CCCAGCGCGG ATGAAAGATT ACATTGCCGT CCCGAAAGCC AACGGCTATC AATCGCTGCA CACTTCCATG GTTGGCCCCC ACGGCGTTCC AGTTGAAGTG CAGATCCGTA CCGAAGATAT GGATCAGATG GCGGATAAAG GGGTGGCAGC CCATTGGTCG TACAAAGCCA ATAGTGAACG AGGTGGCACT ACCGCGCAGA TTAAAGCCCA GCGCTGGATG CAAAGCTTGC TCGAGTTACA GCAAAGTGCC GGTAACTCCT TTGAATTTAT CGAAAACGTC AAATCCGATC TGTTCCCAGA TGAGATTTAC GTATTCACTC CCAAAGGCCG TATCGTTGAG CTGCCAATGG GCGCAACTGC CGTCGATTTT GCTTACGCGG TACATACCGA CATCGGTAAT ACCTGCGTCG GCGCGCGAGT CGATCGCACG CCATACCCGC TCAGCCAATC GCTGAAAAGT GGCCAGACGG TGGAGATCAT CAGCGCGCCG GGCGCACGTC CGAATGCAGC ATGGCTCAAC TATGTGGTGA CTTCGCGCGC GCGTACCAAA ATCCGCCAAG TGCTGAAGAC GATGCGTCGC GAAGACTCAA TTACTCTCGG TCGTCGCCTG CTTAACCATG CGCTTGGCGA ACACTCGGTT AACGAAATTG CCCCAGAGAA CATCAGCAAA GTCTTGAGCG ATCTAAAAAT CGCCTCGATG GATGATTTAC TGGCCGCGAT TGGTTTGGGT GAGTTGATGA GTATCGTGAT TGCACGCCGC CTACTTGGCA ATGCTGATGA ACTGACCGAG CCTAGCAAAT CCGGCGGCAA TAAAAATAAA CTGCCGATCC GCGGCGCAGA AGGCATTCTG CTCACCTTTG CCAACTGTTG TCACCCCATT CCTGACGATC ACATCATCGC TCACGTTTCA CCGGGACGTG GCTTAGTGGT ACACCGTGAA ACCTGTCCAA ACGTACGCGG CTATCAAAAA GAGCCAGACA AGTACATGGC GGTGGAATGG ACTAAAGATT ACGATCAAGA GTTCATTACT GAGCTGAAAG TGGATATGCA CAACCGCCAA GGTGCATTGG CTGAACTGAC CAATGTGATC TCCAAAACGG GCTCGAATAT TCATGGCCTG TCAACGGAAG AGCGCGATGG TCGCTTGTAC ACAGTCACCG TTCTGCTCAC CACCAAAGAT CGGGTGCATT TAGCTGGCAT CATGCGCAAA ATTCGCACCA TGCCCCACGC GCTTAAAGTG CGCCGCCGTA AGAACTGA
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Protein sequence | MYLFDSLKDV AQEYLTEPQI EALRQSYVVA RDAHEGQTRS SGEPYIIHPV AVARILAEMR LDLETLQAAL LHDVIEDCDV TKEDLDAHFG SSVAELVDGV SKLDKLKFRD RKEAQAENFR KMVLAMVQDI RVILIKLADR THNMRTLGAL RPDKKRRIAR ETLEIYAPLA HRLGIHNIKT ELEELGFEAL YPNRYRVLKE VVKAARGNRK EMIQRIHSEI EGRLQEVGLP ARVVGREKNL FSIYNKMKTK EQRFHTIMDI YAFRIVVDTA DTCYRVLGQV HSLYKPRPAR MKDYIAVPKA NGYQSLHTSM VGPHGVPVEV QIRTEDMDQM ADKGVAAHWS YKANSERGGT TAQIKAQRWM QSLLELQQSA GNSFEFIENV KSDLFPDEIY VFTPKGRIVE LPMGATAVDF AYAVHTDIGN TCVGARVDRT PYPLSQSLKS GQTVEIISAP GARPNAAWLN YVVTSRARTK IRQVLKTMRR EDSITLGRRL LNHALGEHSV NEIAPENISK VLSDLKIASM DDLLAAIGLG ELMSIVIARR LLGNADELTE PSKSGGNKNK LPIRGAEGIL LTFANCCHPI PDDHIIAHVS PGRGLVVHRE TCPNVRGYQK EPDKYMAVEW TKDYDQEFIT ELKVDMHNRQ GALAELTNVI SKTGSNIHGL STEERDGRLY TVTVLLTTKD RVHLAGIMRK IRTMPHALKV RRRKN
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