Gene VC0395_A2282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2282 
SymbolspoT 
ID5135628 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2434848 
End bp2436965 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content52% 
IMG OID640533738 
Productbifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 
Protein accessionYP_001218198 
Protein GI147675346 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTATCTAT TCGATAGTCT AAAAGACGTT GCCCAAGAAT ACCTCACAGA GCCTCAAATT 
GAGGCTCTGC GCCAATCTTA TGTGGTAGCC AGAGATGCCC ATGAAGGGCA AACCCGCTCA
AGCGGCGAAC CTTATATCAT TCACCCTGTT GCCGTCGCGC GAATTCTCGC CGAGATGCGT
CTCGACCTAG AAACGCTACA AGCGGCACTG CTGCATGATG TGATTGAAGA TTGTGATGTC
ACCAAAGAAG ACTTAGATGC CCATTTTGGC AGCTCAGTCG CCGAGTTGGT GGACGGGGTG
TCTAAGCTCG ATAAGCTCAA ATTTCGCGAT CGCAAAGAGG CGCAGGCGGA AAACTTTCGC
AAAATGGTGC TGGCCATGGT GCAGGATATT CGGGTTATCC TAATCAAACT GGCCGACCGC
ACGCACAACA TGCGCACCCT CGGTGCACTG CGTCCGGACA AAAAACGCCG CATTGCCCGT
GAAACCTTAG AAATTTATGC TCCCCTCGCC CATCGTTTGG GTATCCATAA CATCAAAACC
GAACTCGAAG AGTTAGGCTT TGAAGCGCTC TACCCGAATC GTTATCGCGT CCTTAAAGAG
GTGGTGAAAG CCGCGCGCGG TAACCGCAAA GAGATGATCC AACGCATCCA CAGTGAAATC
GAAGGCCGCT TACAAGAAGT GGGGCTGCCG GCTCGCGTGG TGGGTCGTGA GAAAAACCTG
TTCTCCATCT ACAACAAGAT GAAAACCAAA GAGCAGCGCT TTCACACCAT TATGGATATT
TACGCGTTTC GGATTGTGGT GGATACCGCA GATACCTGCT ATCGCGTGTT GGGTCAGGTG
CATAGCTTGT ACAAGCCGCG CCCAGCGCGG ATGAAAGATT ACATTGCCGT CCCGAAAGCC
AACGGCTATC AATCGCTGCA CACTTCCATG GTTGGCCCCC ACGGCGTTCC AGTTGAAGTG
CAGATCCGTA CCGAAGATAT GGATCAGATG GCGGATAAAG GGGTGGCAGC CCATTGGTCG
TACAAAGCCA ATAGTGAACG AGGTGGCACT ACCGCGCAGA TTAAAGCCCA GCGCTGGATG
CAAAGCTTGC TCGAGTTACA GCAAAGTGCC GGTAACTCCT TTGAATTTAT CGAAAACGTC
AAATCCGATC TGTTCCCAGA TGAGATTTAC GTATTCACTC CCAAAGGCCG TATCGTTGAG
CTGCCAATGG GCGCAACTGC CGTCGATTTT GCTTACGCGG TACATACCGA CATCGGTAAT
ACCTGCGTCG GCGCGCGAGT CGATCGCACG CCATACCCGC TCAGCCAATC GCTGAAAAGT
GGCCAGACGG TGGAGATCAT CAGCGCGCCG GGCGCACGTC CGAATGCAGC ATGGCTCAAC
TATGTGGTGA CTTCGCGCGC GCGTACCAAA ATCCGCCAAG TGCTGAAGAC GATGCGTCGC
GAAGACTCAA TTACTCTCGG TCGTCGCCTG CTTAACCATG CGCTTGGCGA ACACTCGGTT
AACGAAATTG CCCCAGAGAA CATCAGCAAA GTCTTGAGCG ATCTAAAAAT CGCCTCGATG
GATGATTTAC TGGCCGCGAT TGGTTTGGGT GAGTTGATGA GTATCGTGAT TGCACGCCGC
CTACTTGGCA ATGCTGATGA ACTGACCGAG CCTAGCAAAT CCGGCGGCAA TAAAAATAAA
CTGCCGATCC GCGGCGCAGA AGGCATTCTG CTCACCTTTG CCAACTGTTG TCACCCCATT
CCTGACGATC ACATCATCGC TCACGTTTCA CCGGGACGTG GCTTAGTGGT ACACCGTGAA
ACCTGTCCAA ACGTACGCGG CTATCAAAAA GAGCCAGACA AGTACATGGC GGTGGAATGG
ACTAAAGATT ACGATCAAGA GTTCATTACT GAGCTGAAAG TGGATATGCA CAACCGCCAA
GGTGCATTGG CTGAACTGAC CAATGTGATC TCCAAAACGG GCTCGAATAT TCATGGCCTG
TCAACGGAAG AGCGCGATGG TCGCTTGTAC ACAGTCACCG TTCTGCTCAC CACCAAAGAT
CGGGTGCATT TAGCTGGCAT CATGCGCAAA ATTCGCACCA TGCCCCACGC GCTTAAAGTG
CGCCGCCGTA AGAACTGA
 
Protein sequence
MYLFDSLKDV AQEYLTEPQI EALRQSYVVA RDAHEGQTRS SGEPYIIHPV AVARILAEMR 
LDLETLQAAL LHDVIEDCDV TKEDLDAHFG SSVAELVDGV SKLDKLKFRD RKEAQAENFR
KMVLAMVQDI RVILIKLADR THNMRTLGAL RPDKKRRIAR ETLEIYAPLA HRLGIHNIKT
ELEELGFEAL YPNRYRVLKE VVKAARGNRK EMIQRIHSEI EGRLQEVGLP ARVVGREKNL
FSIYNKMKTK EQRFHTIMDI YAFRIVVDTA DTCYRVLGQV HSLYKPRPAR MKDYIAVPKA
NGYQSLHTSM VGPHGVPVEV QIRTEDMDQM ADKGVAAHWS YKANSERGGT TAQIKAQRWM
QSLLELQQSA GNSFEFIENV KSDLFPDEIY VFTPKGRIVE LPMGATAVDF AYAVHTDIGN
TCVGARVDRT PYPLSQSLKS GQTVEIISAP GARPNAAWLN YVVTSRARTK IRQVLKTMRR
EDSITLGRRL LNHALGEHSV NEIAPENISK VLSDLKIASM DDLLAAIGLG ELMSIVIARR
LLGNADELTE PSKSGGNKNK LPIRGAEGIL LTFANCCHPI PDDHIIAHVS PGRGLVVHRE
TCPNVRGYQK EPDKYMAVEW TKDYDQEFIT ELKVDMHNRQ GALAELTNVI SKTGSNIHGL
STEERDGRLY TVTVLLTTKD RVHLAGIMRK IRTMPHALKV RRRKN