Gene VC0395_A2279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2279 
Symbol 
ID5137176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp2432774 
End bp2433445 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content48% 
IMG OID640533735 
Producthypothetical protein 
Protein accessionYP_001218195 
Protein GI147674537 
COG category[S] Function unknown 
COG ID[COG1738] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00697] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCACT TTACCCCTGC GCAGCAGCGC AAAGCCCTTG GCTATCTTGT TTTGTTTCAC 
CTCGTGATCA TTGCGTCGAG CAATTATCTG GTGCAAATCC CGTTTACCAT TTTCGGTTTC 
CACACTACGT GGGGCGCATT CACTTTTCCG TTTATCTTTT TAGCGACCGA TCTCACCGTA 
CGTATTTTTG GTGCAGGATT GGCGCGTAAG ATCATTTTTC TGGTGATGCT CCCTGCATTG 
GCGGTCTCTT ACTTGCTTTC GGTGGTGTTT TTTGAAGGCC AATACCAAGG TTTAGCGCCG 
CTGAGTGAAT TCAATCTGTT TGTCGCGCGG ATTGCGATCG CCAGTTTTAT GGCATATCTG 
CTTGGGCAGA TCATGGATGT GCATGTGTTC AACCGCCTAC GTCAAATGAA GCAGTGGTGG 
GTGGCGCCAA CCTGTTCGAC GCTGTTTGGT AATGCACTCG ATACCATCGC TTTCTTCTCG 
ATTGCTTTCT ACCAGAGCAG CGATCCGTTT ATGGCTGAGC ATTGGACGGA AATCGCTTTA 
GTCGATTACA CCTTCAAGCT CATCATTAGC TTAGGTTTGT TTGTGCCTAT GTACGGCGTC 
TTGCTTAATT ACCTGATCAA AAAGCTGACT GCGGTGAACC CCAATTTTGC GATGGCGAGT 
GCCAAAGCCT AA
 
Protein sequence
MNHFTPAQQR KALGYLVLFH LVIIASSNYL VQIPFTIFGF HTTWGAFTFP FIFLATDLTV 
RIFGAGLARK IIFLVMLPAL AVSYLLSVVF FEGQYQGLAP LSEFNLFVAR IAIASFMAYL 
LGQIMDVHVF NRLRQMKQWW VAPTCSTLFG NALDTIAFFS IAFYQSSDPF MAEHWTEIAL 
VDYTFKLIIS LGLFVPMYGV LLNYLIKKLT AVNPNFAMAS AKA