Gene VC0395_A2197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2197 
SymbolrimO 
ID5136627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2342846 
End bp2344258 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content50% 
IMG OID640533653 
Productribosomal protein S12 methylthiotransferase 
Protein accessionYP_001218113 
Protein GI147675671 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGTTC AGACTTTTAC GCCAAATCAA ACCACGACAC TGGAAACGGC GAAAAAAACC 
ATCGCCGAGC AAAGCCAAAA TAGCCAAACC ACAGGCAATA AAATTGGCTT TGTTTCCTTA
GGTTGCCCAA AAAACTTAGT GGATTCAGAA CGCATTCTGA CCCAACTACG CACTGAGGGG
TATGAGATCG TCAACAGCTA CCACGACTCC GATGTGGTGA TCGTTAACAC CTGTGGTTTT
ATCGACAGTG CGGTGCAAGA GTCTCTGGAT ACCATTGGCG AAGCGCTGAA AGAGAACGGC
AAAGTGATTG TGACGGGCTG CCTCGGCGCG CGTGAAGATG AAATTCGCCA AGTACACCCC
AATGTGCTCG GTATTACAGG CCCACACGCT TACCAAAACG TATTGGAGCA CGTACACCAA
TACGCGCCAA AGCCAGCCCA CAACCCGTTT ACCAGCTTAG TGCCGGATCA CGGGGTGAAA
CTGACGCCAA AGCATTACGC TTACCTGAAA ATTTCTGAAG GTTGTAACCA CCGTTGTACT
TTCTGCATCA TCCCTTCAAT GCGTGGGGAT TTGGTAAGCC GCCCAGTGGG TGAAATTATT
GGTGAAGCGG AACGCCTGAA AAATGCGGGC GTAAAAGAGC TGCTCGTAAT CAGCCAAGAC
ACCAGTGCTT ACGGTGTGGA TACCAAACAC AGCCTAGGTT TTGCCAACGG CTCACCGGTG
CGCCACAACA TCAAAGCGCT CAGTGAAGAG CTTGGCAAAA TGGGCATTTG GGTTCGTCTG
CACTACGTTT ACCCTTACCC ACATGTGGAT GAAATCATCC CATTGATGGC AGAAGGAAAA
GTGCTGCCTT ACTTGGATAT TCCATTCCAA CACGCCAGCC CTCGTGTTCT GAAAATGATG
AAGCGTCCGG GGCAAGCGGA GCGCACTTTA GAGCGCATCA AAAAATGGCG TGAAATCTGC
CCAGAGCTCG TGATCCGCTC CACCTTTATT GTGGGCTTCC CGGGCGAAAC TGAAGAAGAT
TTCCAAATCC TACTCGATTG GCTGAAAGAA GCACAACTCG ATCGCGTGGG CTGCTTTAAG
TATTCGCCCG TTGAAGGCGC TGCAGCGAAC GAGATTGAAG ATCAAATCCC AGAAGACGTG
AAACAAGACC GTTTCGAGCG CTTTATGCTC GTGCAGCAAG AGATCAGTGC TGCCAAACTG
CAAAAACGCA TCGGCAGCAC CATGCAAGTG CTGATTGATG AAGTCGATGA TGAAGGCGCG
ATTGGCCGTA CTTACGCCGA TGCACCGGAA ATTGATGGCT TGGTTTACCT CAACGGTGAA
ACCAACCTGA AACCGGGTGA GCTGGTTAAC GTTGTGATTG AACACGCCGA TGAATACGAC
CTATGGGGCA GCGTACTGCA CGACGCGCAG TAA
 
Protein sequence
MTVQTFTPNQ TTTLETAKKT IAEQSQNSQT TGNKIGFVSL GCPKNLVDSE RILTQLRTEG 
YEIVNSYHDS DVVIVNTCGF IDSAVQESLD TIGEALKENG KVIVTGCLGA REDEIRQVHP
NVLGITGPHA YQNVLEHVHQ YAPKPAHNPF TSLVPDHGVK LTPKHYAYLK ISEGCNHRCT
FCIIPSMRGD LVSRPVGEII GEAERLKNAG VKELLVISQD TSAYGVDTKH SLGFANGSPV
RHNIKALSEE LGKMGIWVRL HYVYPYPHVD EIIPLMAEGK VLPYLDIPFQ HASPRVLKMM
KRPGQAERTL ERIKKWREIC PELVIRSTFI VGFPGETEED FQILLDWLKE AQLDRVGCFK
YSPVEGAAAN EIEDQIPEDV KQDRFERFML VQQEISAAKL QKRIGSTMQV LIDEVDDEGA
IGRTYADAPE IDGLVYLNGE TNLKPGELVN VVIEHADEYD LWGSVLHDAQ