Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2197 |
Symbol | rimO |
ID | 5136627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2342846 |
End bp | 2344258 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640533653 |
Product | ribosomal protein S12 methylthiotransferase |
Protein accession | YP_001218113 |
Protein GI | 147675671 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
Num covering plasmid clones | 54 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGTTC AGACTTTTAC GCCAAATCAA ACCACGACAC TGGAAACGGC GAAAAAAACC ATCGCCGAGC AAAGCCAAAA TAGCCAAACC ACAGGCAATA AAATTGGCTT TGTTTCCTTA GGTTGCCCAA AAAACTTAGT GGATTCAGAA CGCATTCTGA CCCAACTACG CACTGAGGGG TATGAGATCG TCAACAGCTA CCACGACTCC GATGTGGTGA TCGTTAACAC CTGTGGTTTT ATCGACAGTG CGGTGCAAGA GTCTCTGGAT ACCATTGGCG AAGCGCTGAA AGAGAACGGC AAAGTGATTG TGACGGGCTG CCTCGGCGCG CGTGAAGATG AAATTCGCCA AGTACACCCC AATGTGCTCG GTATTACAGG CCCACACGCT TACCAAAACG TATTGGAGCA CGTACACCAA TACGCGCCAA AGCCAGCCCA CAACCCGTTT ACCAGCTTAG TGCCGGATCA CGGGGTGAAA CTGACGCCAA AGCATTACGC TTACCTGAAA ATTTCTGAAG GTTGTAACCA CCGTTGTACT TTCTGCATCA TCCCTTCAAT GCGTGGGGAT TTGGTAAGCC GCCCAGTGGG TGAAATTATT GGTGAAGCGG AACGCCTGAA AAATGCGGGC GTAAAAGAGC TGCTCGTAAT CAGCCAAGAC ACCAGTGCTT ACGGTGTGGA TACCAAACAC AGCCTAGGTT TTGCCAACGG CTCACCGGTG CGCCACAACA TCAAAGCGCT CAGTGAAGAG CTTGGCAAAA TGGGCATTTG GGTTCGTCTG CACTACGTTT ACCCTTACCC ACATGTGGAT GAAATCATCC CATTGATGGC AGAAGGAAAA GTGCTGCCTT ACTTGGATAT TCCATTCCAA CACGCCAGCC CTCGTGTTCT GAAAATGATG AAGCGTCCGG GGCAAGCGGA GCGCACTTTA GAGCGCATCA AAAAATGGCG TGAAATCTGC CCAGAGCTCG TGATCCGCTC CACCTTTATT GTGGGCTTCC CGGGCGAAAC TGAAGAAGAT TTCCAAATCC TACTCGATTG GCTGAAAGAA GCACAACTCG ATCGCGTGGG CTGCTTTAAG TATTCGCCCG TTGAAGGCGC TGCAGCGAAC GAGATTGAAG ATCAAATCCC AGAAGACGTG AAACAAGACC GTTTCGAGCG CTTTATGCTC GTGCAGCAAG AGATCAGTGC TGCCAAACTG CAAAAACGCA TCGGCAGCAC CATGCAAGTG CTGATTGATG AAGTCGATGA TGAAGGCGCG ATTGGCCGTA CTTACGCCGA TGCACCGGAA ATTGATGGCT TGGTTTACCT CAACGGTGAA ACCAACCTGA AACCGGGTGA GCTGGTTAAC GTTGTGATTG AACACGCCGA TGAATACGAC CTATGGGGCA GCGTACTGCA CGACGCGCAG TAA
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Protein sequence | MTVQTFTPNQ TTTLETAKKT IAEQSQNSQT TGNKIGFVSL GCPKNLVDSE RILTQLRTEG YEIVNSYHDS DVVIVNTCGF IDSAVQESLD TIGEALKENG KVIVTGCLGA REDEIRQVHP NVLGITGPHA YQNVLEHVHQ YAPKPAHNPF TSLVPDHGVK LTPKHYAYLK ISEGCNHRCT FCIIPSMRGD LVSRPVGEII GEAERLKNAG VKELLVISQD TSAYGVDTKH SLGFANGSPV RHNIKALSEE LGKMGIWVRL HYVYPYPHVD EIIPLMAEGK VLPYLDIPFQ HASPRVLKMM KRPGQAERTL ERIKKWREIC PELVIRSTFI VGFPGETEED FQILLDWLKE AQLDRVGCFK YSPVEGAAAN EIEDQIPEDV KQDRFERFML VQQEISAAKL QKRIGSTMQV LIDEVDDEGA IGRTYADAPE IDGLVYLNGE TNLKPGELVN VVIEHADEYD LWGSVLHDAQ
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