Gene VC0395_A2174 details

Gene Information

• Locus tag: VC0395_A2174
• Symbol: rplC
• ID: 5136462
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2317706
• End bp: 2318335
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640533630
• Product: 50S ribosomal protein L3
• Protein accession: YP_001218090
• Protein GI: 147673700
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000000029924
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGGTC TAATCGGTCG TAAAGTGGGC ATGACCCGCG TATTTACTGA AGACGGCGTT 
TCTATCCCAG TAACTGTTGT TGAAGTTGAA GCAAACCGCG TTTCTCAAGT GAAAACTCTT 
GAAACTGATG GCTACGCTGC AATCCAAGTC ACTACTGGTT CTAAGAAAGC TAACCGTGTT 
ACTAAGCCAG AAGCTGGTCA CTTCGCGAAA GCGGGTGTAG AAGCTGGTCG CGGTCTTTGG 
GAATTCCGTT TGGAAAACGG TGAAGAGTTT GCAGTAGGTT CTGAACTGAC TGTTGAACTG 
TTCAACGAAG TAAAAAAAGT AGACGTTACT GGTACATCTA AGGGTAAAGG TTTCCAAGGT 
GCTGTTAAGC GCTGGAACTT CCGCACTCAA GATATGACTC ACGGTAACTC ATTGTCTCAC 
CGTGCTCCTG GTTCAATTGG CCAATGTCAA ACTCCAGGTC GCGTGTTCAA AGGCAAAAAA 
ATGGCAGGTC ACATGGGTGC TGAGCGTGTA ACGACTCAAA ACCTAGAGAT CGTACGTGTT 
GACGCTGAGC GCAATCTGCT TCTGATTAAA GGTGCAGTCC CAGGCGCAAC TGGCGGTAAC 
GTGATCGTCA AACCAGCTGT TAAAGCGTAA 

 

Protein sequence

MIGLIGRKVG MTRVFTEDGV SIPVTVVEVE ANRVSQVKTL ETDGYAAIQV TTGSKKANRV 
TKPEAGHFAK AGVEAGRGLW EFRLENGEEF AVGSELTVEL FNEVKKVDVT GTSKGKGFQG 
AVKRWNFRTQ DMTHGNSLSH RAPGSIGQCQ TPGRVFKGKK MAGHMGAERV TTQNLEIVRV 
DAERNLLLIK GAVPGATGGN VIVKPAVKA