Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2159 |
Symbol | rplF |
ID | 5135903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2310996 |
End bp | 2311529 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640533615 |
Product | 50S ribosomal protein L6 |
Protein accession | YP_001218075 |
Protein GI | 147673740 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0097] Ribosomal protein L6P/L9E |
TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000000302064 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCGTG TTGCTAAAGC ACCTGTCGCT ATTCCAGCTG GCGTAGAGGT GAAACTGAAC GGCCAAGAGA TCACTATTAA AGGTGCTAAA GGCGAACTTT CTCGCGTTTT CCACAAAGGC GTAGTGATCG CACAAGAAGA CAACCAATTG ACTTTTGGCC CACGTGAAGG CGTAGCCAAT GCATGGGCAC AAGCAGGTAC TGCACGTGCT CTAGTTAAGA ACATGGTTGT TGGTGTTACT GAAGGCTTTA CTAAGAAACT CGTTCTAAAG GGTGTTGGTT ACCGTGCTGC TATGAAAGGC AACGCTGTAG GCCTGACTCT GGGTTTCTCT CACCCTGTTG AGCATGAACT GCCAGAGGGT ATTAAAGCTG AATGTCCAAG CCAAACTGAA ATCGTACTGA CTGGTTGTGA CAAACAACTT GTTGGTCAGG TTGCGGCTGA CATTCGTTCT TACCGCGCGC CTGAGCCTTA CAAAGGCAAA GGTATTCGTT ACGCAGATGA AAATGTGCGT AGTAAAGAAG CTAAGAAGAA GTAA
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Protein sequence | MSRVAKAPVA IPAGVEVKLN GQEITIKGAK GELSRVFHKG VVIAQEDNQL TFGPREGVAN AWAQAGTARA LVKNMVVGVT EGFTKKLVLK GVGYRAAMKG NAVGLTLGFS HPVEHELPEG IKAECPSQTE IVLTGCDKQL VGQVAADIRS YRAPEPYKGK GIRYADENVR SKEAKKK
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