Gene VC0395_A2086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2086 
Symbol 
ID5135336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2244805 
End bp2245782 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content51% 
IMG OID640533542 
Product2-hydroxyacid dehydrogenase family protein 
Protein accessionYP_001218002 
Protein GI147673560 
COG category[C] Energy production and conversion
[R] General function prediction only
[H] Coenzyme transport and metabolism 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.000608304 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACTAC CCACTACTTC TTTGCCTACG GTCGTTTTTC TCGACCGCGC GACCATTCCG 
CGCCATATCC CCTTACCTGC TCTGCCTTTT GAACACCATT GGGTTGAGTA TGATGCTTGT
GAGCCTCACC AAGTGGTTGA GCGCCTCTTA GCGGCCGATA TCGTTATCAC TAATAAGGTG
GTACTCACCC GTGAAATGCT GGTTCAGTTG CCTAAGCTCA AGTTGATCGC CATTTCTGCC
ACGGGCACCA ACAACGTCGA TTTGCAGGCG TGTAGTGACC TGAATATCGC GGTGTGTAAT
GTGCAAGGCT ATGCCACGCG CTCCGTACCA GAGCATGTGA TCGCCATGAT GTTTGCTCTA
AGACGTAATC TTATCGGTTA TCACAATGAT ATTGCGGCCG GAGAGTGGCA GCGCCATAAG
CAGTTCTGTT TTTTCACGCA TCCTATCGGC GATATTGCGG GCTCCACCAT GGGCATTATC
GGCAGTGGTG CATTAGGACA AGCGACGGCG AATTTAGCGC GCGCATTAGG TATGCATGTG
CTGTTTGCTG AACGTAAAGG TCAGTTGGAA TGCCGAGTAG GGTACACGTC ATTTGAACAA
GTGCTGGCGC AATCCGATGT GTTATCCCTG CACTGTCCGC TAATGGATGA AACGCGCAAT
ATTATCTCGG AAGCGGAATT GGTGCAGATG AAGCCCAATG CTCTACTGAT CAATACTGGG
CGCGGTGGTT TAGTGGATGA ACAGGCGCTG GTAGATGCGC TGAAAAGACG TCAAATTGCT
GGGGCTGGGG TGGATGTGTT TAGTGTCGAG CCTGCGGATA TGGATAACCC ACTGATTGCC
AACCGTGATC TGCCCAATCT TCTGCTGACA CCGCATGTGG CGTGGGGCAG TGATTCCTCG
ATACAACAAC TCGCGACTAT CTTGATCGAC AACATCAGTG CATTTATGCG TGGTGAAGCG
AAAAATCGAG TCGTCTAG
 
Protein sequence
MSLPTTSLPT VVFLDRATIP RHIPLPALPF EHHWVEYDAC EPHQVVERLL AADIVITNKV 
VLTREMLVQL PKLKLIAISA TGTNNVDLQA CSDLNIAVCN VQGYATRSVP EHVIAMMFAL
RRNLIGYHND IAAGEWQRHK QFCFFTHPIG DIAGSTMGII GSGALGQATA NLARALGMHV
LFAERKGQLE CRVGYTSFEQ VLAQSDVLSL HCPLMDETRN IISEAELVQM KPNALLINTG
RGGLVDEQAL VDALKRRQIA GAGVDVFSVE PADMDNPLIA NRDLPNLLLT PHVAWGSDSS
IQQLATILID NISAFMRGEA KNRVV