| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2082 |
|---|
| Symbol | |
|---|
| ID | 5135294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2238434 |
|---|
| End bp | 2239534 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640533538 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217998 |
|---|
| Protein GI | 147673657 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000000432404 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTATTG TTAGATATTT GATCCGAGAA ACAATAAAAA GCCAGTTTGC GATCTTCTTC
GTGCTGTTTT TAGTGTTTCT CAGCCAGAAA TTTATCCGTG TTTTGGCGGA TGTCTCTGAC
GGTGAAATTC CTACCAGCAT GATCTTATCC ATCGTTGGAT TGAATATGCC GGCAATGGGC
TTATTAATGC TGCCACTTAG CCTGTACATC GGTATTCTGC TTACTTTCGG CCGTTTGTAT
GCGGAGAGTG AGATAACCGT GATGAATGCG ACTGGGATCG GTAACAAATT TTTGATCCGT
GCCGCCTTAT ATTTGGCTTT GATTACGGCT TCTGTGGCGG CTTTTAATGC GCTGTGGCTC
GCGCCTTGGA GCCAAGATAA AGAAGCTCAT TTAATGGAGC AGTTTGCGGC AGAAAACAGT
GTCGATCTGC TGCAAAAAGG CCACTTCCAA CGTTCGCCAG ATGGCTCTTC GGTGGTGTTC
ATCGACAATA TTGAAAATCG TAAATTGTAT AACGTGTTTG TGGCGCAGTT AGCACCACGA
GATTCGATTT TACCCAGCGT GATGTTTTCT CACTCGGGCG ATGTTAAAGA GCTGAGTGAT
GGCCGTCAGA TCATTACTCT CTATGACGGC ACTCGCTATG AAGGCGTACC TACCCGAGTC
GACTACATGA TCACTAACTT CGACTCTTAC GACGGCTTGA TCGGCCAACG TGAAGTGAAA
TCGGCTGAAC GTGATTGGGA AGCTCTGCCA ACCTTAAGCT TGCTCAATAA TGCGGATCGC
CGAGCACAAG CCGAATTACA ATGGCGAATC TCTCTCGTAG TGTGTATTCC ACTGTTGACT
ATGTTGGTTG TCCCTCTTTC CGCGGTGAAC CCTCGTCAAG GACGTTTTGC CAAAATGGGA
CCCGCTATTT TGATCTATTT GACTTATTTC CTTGCGCTCA GTGCGACCAA ATCAGCGATT
GAAGATGGTT CACTGCCGGT TATCATTGGC TTGTGGCCAA TTAATGCCGC ACTGCTGTTG
GCTGCGCTGA TGGTCAATAC CTTGGATAGC ATTCCAGTGC GCCGTCTTAA AGATCGATGG
AAACAGAGAA AGGTAGCTTA A
|
|---|
| Protein sequence | MIIVRYLIRE TIKSQFAIFF VLFLVFLSQK FIRVLADVSD GEIPTSMILS IVGLNMPAMG
LLMLPLSLYI GILLTFGRLY AESEITVMNA TGIGNKFLIR AALYLALITA SVAAFNALWL
APWSQDKEAH LMEQFAAENS VDLLQKGHFQ RSPDGSSVVF IDNIENRKLY NVFVAQLAPR
DSILPSVMFS HSGDVKELSD GRQIITLYDG TRYEGVPTRV DYMITNFDSY DGLIGQREVK
SAERDWEALP TLSLLNNADR RAQAELQWRI SLVVCIPLLT MLVVPLSAVN PRQGRFAKMG
PAILIYLTYF LALSATKSAI EDGSLPVIIG LWPINAALLL AALMVNTLDS IPVRRLKDRW
KQRKVA
|
|---|
| |