Gene VC0395_A2056 details

Gene Information

• Locus tag: VC0395_A2056
• Symbol: rpiA
• ID: 5136832
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2212265
• End bp: 2212921
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640533513
• Product: ribose-5-phosphate isomerase A
• Protein accession: YP_001217980
• Protein GI: 147675007
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0120] Ribose 5-phosphate isomerase
• TIGRFAM ID: [TIGR00021] ribose 5-phosphate isomerase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.000849677
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCAAG ATGAAATGAA AAAAGCCGCC GGTTGGGCTG CTCTGAAATA CGTAGAAAAA 
GGCAGCATTG TCGGTGTTGG TACGGGCTCA ACCGTTAATC ACTTCATCGA TGCTTTAGGC 
ACTATCAAAG ACGAAATCAA AGGCGCGGTT TCGAGCTCAA TTGCTTCGAC TGCGAAACTG 
GAAGCACTCG GCATCCGTGT TTATGACTGT AACGATGTAT CGGAGCTGGA CATCTATGTC 
GATGGTGCTG ATGAGATCAA CCCAGAACGC GACATGATCA AAGGTGGCGG TGCAGCACTG 
ACGCGTGAAA AAATCGTCGC AGCGATTGCC AAAAAATTTG TGTGTATTGT CGATGGCACT 
AAAGCGGTCG ATGTTCTAGG CAACTTCCCT CTGCCTGTTG AAGTGATCCC AATGGCGCGC 
TCTTATGTCG CGCGCGAACT GGTAAAACTC GGCGGCGATC CTGTGTATCG TGAAGGTGTG 
ATCACCGATA ACGGTAACGT TATTCTGGAT GTCTACAACA TGAAGATCAC CCATCCCAAA 
GATCTCGAAA GCAAGATCAA CGGCATCGCA GGGGTTGTGA CCGTGGGTCT CTTTGCTCAT 
CGCGGGGCTG ATGTGGTCAT CACTGGCACA CCACAAGGTG CAAAAATCGA AGAGTAA 

 

Protein sequence

MTQDEMKKAA GWAALKYVEK GSIVGVGTGS TVNHFIDALG TIKDEIKGAV SSSIASTAKL 
EALGIRVYDC NDVSELDIYV DGADEINPER DMIKGGGAAL TREKIVAAIA KKFVCIVDGT 
KAVDVLGNFP LPVEVIPMAR SYVARELVKL GGDPVYREGV ITDNGNVILD VYNMKITHPK 
DLESKINGIA GVVTVGLFAH RGADVVITGT PQGAKIEE