| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2030 |
|---|
| Symbol | rumA |
|---|
| ID | 5136111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2186285 |
|---|
| End bp | 2187607 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640533487 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_001217954 |
|---|
| Protein GI | 147674864 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000000223089 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTT TCTTTCAACC GAAAAAGCAC AGCACGTTAG ACACAAAGCA TCAGCCGGTC
ACTATTGAAC GGTTGGATCA CCAAGGCAGC GGACTGGCCT TTTTACACAA GAAACCCTTG
TTTGTTGACG GCGCTTTGCC GGGGGAAGAG GTGCTGATTC AGCTCACTGA AAACAAGAGC
AAATACGCGC GCGGTCAACT GATTAAAGTG TTGAAACCCA GCGCTGAGCG TGTTGCACCT
TTCTGTGCGC ATTATGCGCA ATGTGGTGGT TGTGATTTAC AGCATCTTGA CCGAGCGGGA
CAAATCCATC ACAAGCAGCA AGCCTTAAGT CAATTAATGG TGAAGTTTGC AGGGCAGAGT
CTTGCTCTGT CTGCGCCAGT TTGTTCTGAT GATCAAGGCT ACCGTCGTCG CGCACGCTTA
AGCCTGATGT GGGATAAGAA AACTCAGCAA CTACAATTGG GTTTTCGCCG CAAGCAGAGC
AAAGCGATTG TTAATGTGAC CGATTGCCCC GTGCTGGAGC CGAGTTTAAA TGCGCTGTTG
CCTGATTTGA ACGCTTTGTT GAGTGAGTGG AGTCAACCTG AGCGGTTGGG GCATGTCGAA
TTGGTGAAAG GGGATAACAC TCGCGTGTTG GTGCTGCGCC ATTTAGGCGC GCTGATTGAG
CAAGATCAGC AGCGTTTGAC TGACTTTGCT TCGCAAAACC AACTAACCTT ATATCTGATG
CTGGAAGCCG GCGAGTTGCA ACATGTGCAA GGTGAAGCGC CATACTGTGA AGAAACAGGC
AGCCGCTTAA GTTTCTTGCC CAGCCATTTT ATTCAGGTCA ATCGCGCGGT GAATCAGCAC
ATGGTCGCGC AAGCCTTGAA TTGGCTTGAG GTTAGCCCAC AAGAACACGT GCTCGATCTC
TTCTGTGGCT TAGGAAATTT CACGCTGCCG CTGGCCAAAC AAGCGCAAGC GGTGGTGGGT
GTTGAAGGTG TTGATGAGAT GGTGCAACAC GCCACTCATA ACGCGAAATT GAACCAAATC
AATAATGTGG CGTTTTATCA GGCCAATTTG GAACAAGATA TGACGAGCGC CTCATGGGCG
CAGCAGAAAT TTGCTAAAGT ACTGCTCGAC CCAGCCCGCG CAGGCGCAGA AGGGATTGTG
GATCAACTCT CTGCGTTAGG TGCCAAGCGG GTTGTGTACG TGTCGTGTAA CCCTGCGACA
TTAGCACGAG ACAGTCAAAG CTTGCTGAGC CAAGGATTTC GCTTAGAGAA ACTGGGGATG
CTCGATATGT TCCCGCACAC CAGTCATCTC GAGTCCATGG CTTTGTTTGT GAAAAAGGGC
TAG
|
|---|
| Protein sequence | MARFFQPKKH STLDTKHQPV TIERLDHQGS GLAFLHKKPL FVDGALPGEE VLIQLTENKS
KYARGQLIKV LKPSAERVAP FCAHYAQCGG CDLQHLDRAG QIHHKQQALS QLMVKFAGQS
LALSAPVCSD DQGYRRRARL SLMWDKKTQQ LQLGFRRKQS KAIVNVTDCP VLEPSLNALL
PDLNALLSEW SQPERLGHVE LVKGDNTRVL VLRHLGALIE QDQQRLTDFA SQNQLTLYLM
LEAGELQHVQ GEAPYCEETG SRLSFLPSHF IQVNRAVNQH MVAQALNWLE VSPQEHVLDL
FCGLGNFTLP LAKQAQAVVG VEGVDEMVQH ATHNAKLNQI NNVAFYQANL EQDMTSASWA
QQKFAKVLLD PARAGAEGIV DQLSALGAKR VVYVSCNPAT LARDSQSLLS QGFRLEKLGM
LDMFPHTSHL ESMALFVKKG
|
|---|
| |