| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2013 |
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| Symbol | tolC |
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| ID | 5135112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2163733 |
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| End bp | 2165049 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640533470 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001217937 |
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| Protein GI | 147674026 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000000158125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC TGCTTCCATT ATTTGTTAGT GCTGCGCTAG GCACACTAAG CTCTGCCGTT
TGGGCAGAAA ACCTGGCAGA GATTTATAAC CAAGCAAAAG AAAATGATCC CCAATTACTC
AGCGTAGCGG CTCAACGTGA TGCTGCGTTT GAAGCGGTGA CTTCTAGCCG TAGTGCCCTT
TTACCACAAA TTAATCTGAC GGCGGGTTAC AACATCAACC GCAGTGATCA AGATCCACGC
GAAAGTGATC TTCTCTCTGC AGGCATCAAC TTTTCACAAG AACTGTACCA ACGCTCTAGC
TGGGTAAGCT TAGACACGGC TGAGAAAAAA GCCCGCCAAG CAGACTCTCA ATACGCTGCC
ACGCAACAAG GCTTAATCTT ACGTGTGGCG AAGGCTTATT TTGAAGTGCT CCGCGCTCAA
GATAACCTTG AATTCGTGCG CGCCGAAAAA GCGGCGGTAG GTCGCCAATT AGAGCAAACC
AAGCAACGCT TTGAAGTCGG TTTGTCAGCG ATTACCGACG TACATGATGC ACAGGCACAA
TTCGATGGTG TATTAGCCGA TGAAGTGTTG GCGGAAAACA GCCTCACCAA TAGCTATGAA
GCTCTGCGTG AAATTACGGG TCAGGAATAC TCTAAGCTTG CGGTGCTCGA TACCAAACGT
TTTGCTGCGA GTCGTACGAC CGAATCGAGC GAAGCGTTGA TCGAAAAAGC GCAACAGCAA
AACTTATCGC TGCTTGCTGC TCGTATCAGC CAAGATGTCG CACGTGACAA CATTTCGCTT
GCCAGCTCTG GCCATCTGCC ATCACTGACC TTAGATGGTG GTTACAACTA TGGCAACAAT
AGCAACGACA ATGCGAAAAA CACTTCAGGC GAAGAGTACA ACGATTTCAA AATCGGCGTG
AACCTCAAAG TACCGCTGTA CACAGGTGGC AACACCACGT CACTGACCAA GCAGGCTGAA
TTTGCGTATG TAGCCGCCAG TCAAGATCTG GAAGCCGCTT ACCGCTCAGT GGTTAAAGAT
GTGCGTGCAT ACAACAACAA CATCAACGCT TCAATTGGTG CACTGCGTGC TTATGAGCAG
GCAGTGATTT CTGCGAAGTC AGCACTGGAA GCGACCGAAG CAGGTTTTGA TGTCGGTACG
CGTACCATTG TCGATGTACT CGATGCCACA CGTCGCCTGT ATGATGCGAA CAAAAATCTC
TCGAATGCTC GCTATGACTA CATTCTCAGT GTGCTGCAAC TGCGCCAAGC GATTGGTACT
CTGAGTGAGC AAGACGTGAT GGATGTCAAC GCAGGCCTAA AAGTCGCGAA GAAGTAA
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| Protein sequence | MKKLLPLFVS AALGTLSSAV WAENLAEIYN QAKENDPQLL SVAAQRDAAF EAVTSSRSAL
LPQINLTAGY NINRSDQDPR ESDLLSAGIN FSQELYQRSS WVSLDTAEKK ARQADSQYAA
TQQGLILRVA KAYFEVLRAQ DNLEFVRAEK AAVGRQLEQT KQRFEVGLSA ITDVHDAQAQ
FDGVLADEVL AENSLTNSYE ALREITGQEY SKLAVLDTKR FAASRTTESS EALIEKAQQQ
NLSLLAARIS QDVARDNISL ASSGHLPSLT LDGGYNYGNN SNDNAKNTSG EEYNDFKIGV
NLKVPLYTGG NTTSLTKQAE FAYVAASQDL EAAYRSVVKD VRAYNNNINA SIGALRAYEQ
AVISAKSALE ATEAGFDVGT RTIVDVLDAT RRLYDANKNL SNARYDYILS VLQLRQAIGT
LSEQDVMDVN AGLKVAKK
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