| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2002 |
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| Symbol | pilD |
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| ID | 5136665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2153852 |
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| End bp | 2154727 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533459 |
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| Product | leader peptidase PilD |
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| Protein accession | YP_001217926 |
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| Protein GI | 147675471 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00673434 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTGT TTTACTTCTA CCCTTGGCTG TTTCCGGTGC TCGCCACGCT GTTTGGCTTG
ATTGTCGGTA GCTTTCTCAA TGTGGTGATC TATCGCTTAC CCAAAATCAT GGAGCGTGAA
TGGCGCGCGG AATGTGCGGC GAGTTTTCCT GAATATGGCA TCACGCCACC AGAGGGTAAA
CTGACCCTCA GTTTGCCGCG TTCCACTTGC CCACACTGTC AAACGCCGAT TCGCGTCATT
GATAATATCC CGCTACTGAG TTGGCTAGCG CTGCGCGGTC AATGCTCACA CTGTAAAGCG
CCGATCAGCG CTCGCTATCC CTTGATTGAG CTACTCACTG CCCTCATGAG CTTAGTGATT
GCCACTCACT TTCCGTTCGG AGTTTTTGCC GTGGCGCTGC TGTTTTTCAG CTATGTGTTG
ATTGCGGCAA CCTTCATCGA CTTCGATACC CTGTTGTTGC CCGACCAATT AACGCTACCT
TTACTGTGGG GCGGTATTGC ACTGGCACTG CTTGGTTTTT CTCCTGTTTC ACTCAGTGAT
GCGGTGATCG GAGCCATGGC GGGTTATCTC TCGCTGTGGT CGATTTACTG GCTATTTAAA
CTGCTGACAG GTAAAGAAGG CATGGGTTAT GGCGATTTCA AATTGCTCGC CGCTCTCGGC
GCTTGGCTGG GTTGGCAGCA GTTGCCTGTC ATCGTACTGC TCTCATCGGT GGTTGGGGTG
ATTTTCGGTT TAATCCAACT GCGCCAGCAG AAAAAAGGTA TCGATATGGC CTTTCCGTTT
GGCCCTTATC TCGCCATCGC GGGATGGTTT GCCTTGCTGT GGGGCGATAA GGTAATTGAT
TGGTACTTCA CCACTTGGGT AGGACAACCG TTATGA
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| Protein sequence | MELFYFYPWL FPVLATLFGL IVGSFLNVVI YRLPKIMERE WRAECAASFP EYGITPPEGK
LTLSLPRSTC PHCQTPIRVI DNIPLLSWLA LRGQCSHCKA PISARYPLIE LLTALMSLVI
ATHFPFGVFA VALLFFSYVL IAATFIDFDT LLLPDQLTLP LLWGGIALAL LGFSPVSLSD
AVIGAMAGYL SLWSIYWLFK LLTGKEGMGY GDFKLLAALG AWLGWQQLPV IVLLSSVVGV
IFGLIQLRQQ KKGIDMAFPF GPYLAIAGWF ALLWGDKVID WYFTTWVGQP L
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