| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2000 |
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| Symbol | pilB |
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| ID | 5135107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2150837 |
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| End bp | 2152525 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640533457 |
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| Product | type IV pilus assembly protein PilB |
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| Protein accession | YP_001217924 |
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| Protein GI | 147674247 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.758865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCACCA ACCTTGTTGC TATCTTGCGT CAGGCTGAGT TAATCAGCGC AACGCAAGAA
CAAGCGGTGG TTACACAGGT TAGCGCTTCG GGGACTTCGG TGCCCGAGGC GCTGCTTGAG
TTAAGTATTT TTCACGCCCA AGAACTGACC GAACAACTGA GCCATATTTT CGGCTTGCCG
GAAACCGACC TTAGCCGCTA CGACTACGCC AACTTGTGCC AACAGCTCGG GCTGCGTGAA
CTGATTACCC GCTACGATGC CTTGCCGATT GCCAAGCAAG GCAATTTATT GCTGCTTGCG
GTCTCTGACC CGACCTTACT GCAAGCCGAA GAAGAATTTC GTTTTGCCAC AGGATTACAA
GTTGAACTGG CACTGGCCGA TCACCGCGCG CTGCAAGCCG CGATTCGCCG TTTGTATGGC
CGCTCAATTC AAGGCGCAGC CAACCAAGGG AAAGAGATCA GCCAAGATGA GCTCGCCAAT
CTGGTTAAAG TCAGTGACGA CGAGCTGCAA TCCATTGAAG ATCTCAGCCA AGATGACTCT
CCGGTTAGCC GCTTTATCAA CCAAGTGCTG CTCGATGCGG TACGTAAAGG TGCCTCGGAT
ATTCATTTTG AGCCGTATGA AAACCAGTAT CGGATCCGCC TGCGCTGCGA TGGCATCTTG
GTCGAAACTC AGCAACCGGC TAGCCATTTA AGCCGCCGTT TAGCTGCGCG GATTAAAATT
CTCTCCAAAT TAGATATTGC CGAGCGCCGC TTGCCGCAAG ACGGGCGGAT TAAACTGCGC
CTAAGCCGCG ATACCGCCAT TGATATGCGT GTTTCGACAC TTCCCACTTT ATGGGGAGAA
AAAATCGTGC TGCGTCTGCT CGATAGCAGC GCCGCCAATC TGGATATTGA TAAGCTCGGC
TATAACCCGC AGCAAAAGCA ACTCTACCTC AACGCCCTGA AAAGACCGCA AGGAATGATT
TTAATGACCG GCCCCACCGG CAGCGGCAAA ACCGTTTCGC TCTATACTGG GCTGCGCATT
CTCAACACGT CACAGATCAA TATCTCCACC GCGGAAGATC CGGTAGAAAT TAACCTCTCT
GGGATTAACC AAGTGCAAGT GCAGCCGAAA ATCGGCTTTG GCTTTGCCGA AGCGCTACGC
TCGTTTCTGC GCCAAGACCC GGATGTGGTG ATGGTCGGCG AAATCCGCGA TCTGGAAACC
GCAGAAATCG CGGTCAAAGC CGCGCAAACC GGTCACTTAG TGCTTTCCAC CCTGCACACC
AATTCGGCCG CTGAAACCGT AATTCGTTTA GCCAATATGG GGGTGGAGCC GTTTAACCTC
GCGTCCTCAC TCAGTTTAAT CATCGCCCAA CGCCTCGCGC GCCGCCTATG TAAACACTGC
AAAATCGCGG TGCGCCCTTC TGCCCTATTG CAAAGCCAAT TTGCATTTCA ACCCAATGAA
ATCTTGTATG AAGCGAATGC GGCGGGGTGT AACGAGTGTA CGGGCGGCTA TTCAGGGCGC
GTTGGGATCT ATGAAGTGAT GGCGTTTAAT ACCGAGCTGG CGGAGGCCAT TATGCAACGC
GCCAGCATTC ATCAAATTGA ACGTTTAGCC AAAGCCAATG GCATGCAAAC GTTGCAAGAG
TCCGGTCTTG AAAAGCTGCG CGAAGGCATC ACCAGCTTTG CCGAGCTGCA GCGTGTGCTC
TACTTTTAA
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| Protein sequence | MLTNLVAILR QAELISATQE QAVVTQVSAS GTSVPEALLE LSIFHAQELT EQLSHIFGLP
ETDLSRYDYA NLCQQLGLRE LITRYDALPI AKQGNLLLLA VSDPTLLQAE EEFRFATGLQ
VELALADHRA LQAAIRRLYG RSIQGAANQG KEISQDELAN LVKVSDDELQ SIEDLSQDDS
PVSRFINQVL LDAVRKGASD IHFEPYENQY RIRLRCDGIL VETQQPASHL SRRLAARIKI
LSKLDIAERR LPQDGRIKLR LSRDTAIDMR VSTLPTLWGE KIVLRLLDSS AANLDIDKLG
YNPQQKQLYL NALKRPQGMI LMTGPTGSGK TVSLYTGLRI LNTSQINIST AEDPVEINLS
GINQVQVQPK IGFGFAEALR SFLRQDPDVV MVGEIRDLET AEIAVKAAQT GHLVLSTLHT
NSAAETVIRL ANMGVEPFNL ASSLSLIIAQ RLARRLCKHC KIAVRPSALL QSQFAFQPNE
ILYEANAAGC NECTGGYSGR VGIYEVMAFN TELAEAIMQR ASIHQIERLA KANGMQTLQE
SGLEKLREGI TSFAELQRVL YF
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