Gene VC0395_A1995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1995 
SymbolxerD 
ID5136177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2146613 
End bp2147521 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content50% 
IMG OID640533452 
Productsite-specific tyrosine recombinase XerD 
Protein accessionYP_001217919 
Protein GI147673043 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGAAG CCTTATCTCC CGACCAAGGG TTGGTGGAAC AATTTTTAGA TACCATGTGG 
TTTGAGCGCG GTTTGGCAGA AAATACCGTG GCGTCTTATC GTAATGACTT GAGTAAGCTA
TTAGAGTGGA TGGCGCAGAA CCAGTATCGG CTCGATTTTA TTAGCTTTGC TGGTTTGCAG
GAGTATCAAA GCTGGCTGTC GGAGCAAAAT TACAAACCGA CCTCGAAAGC GCGCATGTTG
TCGGCGATTC GTCGCCTGTT TCAATATCTG CATCGGGAAA AGGTGCGCGC TGATGATCCG
AGTGCGCTGT TGGTGAGCCC GAAACTGCCA ACGCGCTTAC CAAAAGATTT GAGCGAAGCG
CAAGTTGAAG CTTTGCTGAG TGCGCCAGAT CCGCAAAGTC CACTTGAGCT GCGTGATAAA
GCCATGCTGG AATTGCTGTA TGCTACGGGA CTGCGTGTGA CAGAGCTGGT CTCACTGACC
ATGGAAAACA TGAGCTTGCG CCAAGGTGTG GTGCGAGTCA TGGGTAAGGG TGGTAAAGAG
CGTTTGGTGC CTATGGGTGA AAATGCCATT GAATGGATTG AAACTTTTTT GCAGCAGGGA
CGGTCTTTAC TGCTAGGGGA GCAGACGTCG GATATCGTTT TCCCCAGTAG CCGCGGTCAG
CAGATGACCC GGCAAACCTT CTGGCATCGC ATTAAACACT ATGCGGTTAT TGCAGGAATT
GATGTGGAAA AACTCTCGCC GCACGTATTG CGCCATGCGT TTGCCACTCA CTTGCTCAAT
TATGGGGCCG ATCTGCGCGT AGTGCAGATG TTGCTTGGGC ATAGTGATTT ATCGACCACA
CAAATTTATA CTCATGTCGC CACTGAGCGG CTTAAACAAC TCCACAACGA GCACCATCCA
AGGGCTTGA
 
Protein sequence
MSEALSPDQG LVEQFLDTMW FERGLAENTV ASYRNDLSKL LEWMAQNQYR LDFISFAGLQ 
EYQSWLSEQN YKPTSKARML SAIRRLFQYL HREKVRADDP SALLVSPKLP TRLPKDLSEA
QVEALLSAPD PQSPLELRDK AMLELLYATG LRVTELVSLT MENMSLRQGV VRVMGKGGKE
RLVPMGENAI EWIETFLQQG RSLLLGEQTS DIVFPSSRGQ QMTRQTFWHR IKHYAVIAGI
DVEKLSPHVL RHAFATHLLN YGADLRVVQM LLGHSDLSTT QIYTHVATER LKQLHNEHHP
RA