Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1988 |
Symbol | lpdA |
ID | 5136365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2134524 |
End bp | 2135951 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533445 |
Product | dihydrolipoamide dehydrogenase |
Protein accession | YP_001217912 |
Protein GI | 147674273 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAAG AAATTAAAGC CCAAGTCGTG GTGCTTGGTG CCGGTCCTGC TGGTTACTCC GCCGCATTCC GCTGTGCAGA CTTAGGTCTG GATACCGTCA TCATCGAACG TTACAACACG CTAGGTGGTG TGTGTTTGAA CGTTGGTTGT ATTCCTTCTA AAGCACTGCT GCACGTGGCA AAAGTGATTG AAGAAGCCAA AGCGCTGACT GAGCACGGTA TCGTGTTTGG CGAGCCAAAG ACAGACATCG ACAAAGTTCG TCTGTGGAAA GAAAAAGTGA TCAATCAGCT GACCGGTGGT CTGGCTGGTA TGGCAAAAAT GCGTAAAGTG AACGTAGTGA ACGGCTACGG TAAATTCACC GGCCCGAACA CTATTGAAGT GGAAGGCGAA GAGGGCAAAA CTGTCGTAAC TTTCGATAAC GCGATCGTTG CTGCAGGTTC TCGTCCAATC AAACTGCCAT TCATTCCGCA TGAAGACCCA CGTATTTGGG ATTCAACTGA TGCGCTGGAA CTGAAAGAAG TGCCTGGAAA ACTGCTGATC ATGGGCGGCG GTATCATCGG CCTGGAAATG GCGACCGTTT ACCATTCACT GGGTTCTAAA ATTGATGTAG TTGAGATGTT TGACCAACTT ATCCCTGCTG CGGATAAAGA CATGGTTAAA GTCTATACCA AACGCATCAA AGATAAGTTC AACCTGATGC TGGAAACCAA AGTTACCGCC GTTGAAGCGA AAGAAGATGG TATCTACGTT TCAATGGAAG GTAAGAGCGC ACCAGCACAA GCTGAGCGTT ACGATGCGGT TCTGGTTGCA ATTGGCCGTG TACCAAACGG TAAACTACTG GATGCTGAGA AAGCGGGTCT GGAAGTGGAC GAGCGTGGCT TTATCCGCGT GGATAAGCAA ATGCGCACTA ACGTTCCGCA CATCTTCGCG ATCGGTGACA TCGTGGGTCA ACCAATGCTA GCACATAAAG GCGTGCATGA AGGCCACGTA GCGGCAGAAG TGATCTCTGG TAAGAAGCAC TACTTCGATC CAAAAGTGAT CCCATCCATC GCTTACACTG AGCCAGAAGT GGCTTGGGTT GGTAAGACAG AAAAAGAAGC AAAAGCAGAA GGCATCAACT ATGAAGTTGC TACTTTCCCA TGGGCAGCCT CTGGCCGTGC GATTGCTTCT GACTGTGCAG ACGGTATGAC TAAGCTTATC TTCGATAAAG AGACTCATCG TGTGATCGGT GGTGCTATCG TAGGTACTAA CGGTGGTGAA CTGTTGGGTG AAATCGGTCT GGCGATAGAG ATGGGCTGTG ATGCAGAAGA CATCGCACTG ACCATTCATG CTCACCCAAC GCTGCATGAG TCTGTGGGTC TGGCCGCTGA AGTCTTCGAA GGCACCATCA CTGACCTGCC AAACGCCAAA GCGAAAAAGA AAAAATAA
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Protein sequence | MSKEIKAQVV VLGAGPAGYS AAFRCADLGL DTVIIERYNT LGGVCLNVGC IPSKALLHVA KVIEEAKALT EHGIVFGEPK TDIDKVRLWK EKVINQLTGG LAGMAKMRKV NVVNGYGKFT GPNTIEVEGE EGKTVVTFDN AIVAAGSRPI KLPFIPHEDP RIWDSTDALE LKEVPGKLLI MGGGIIGLEM ATVYHSLGSK IDVVEMFDQL IPAADKDMVK VYTKRIKDKF NLMLETKVTA VEAKEDGIYV SMEGKSAPAQ AERYDAVLVA IGRVPNGKLL DAEKAGLEVD ERGFIRVDKQ MRTNVPHIFA IGDIVGQPML AHKGVHEGHV AAEVISGKKH YFDPKVIPSI AYTEPEVAWV GKTEKEAKAE GINYEVATFP WAASGRAIAS DCADGMTKLI FDKETHRVIG GAIVGTNGGE LLGEIGLAIE MGCDAEDIAL TIHAHPTLHE SVGLAAEVFE GTITDLPNAK AKKKK
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