| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1893 |
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| Symbol | ompK |
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| ID | 5137697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2011088 |
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| End bp | 2011978 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640533350 |
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| Product | nucleoside-specific channel-forming protein |
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| Protein accession | YP_001217817 |
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| Protein GI | 147674324 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3248] Nucleoside-binding outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGATTTT TATCGTTATT ATGCCCGCCA GTTGAACGAG CTGCAGTTAT GCGGCCGCCA
TACACAACAC ACTTACAGAG AGTTCCCCTT ATGCGTAAAT CACTTCTTGC TTTAAGCCTA
TTGGCAGCAA CTTCAGCACC TGTTCTGGCC GCTGACTACT CAGATGGCGA TATCCACAAA
AACGATTACA AGTGGATGCA ATTTAACCTG ATGGGTGCAT TCGACGAACT TCCAGGCAAA
TCATCTCATG ATTATCTGGA AATGGAATTT GGCGGTCGTT CTGGTATCTT TGATCTGTAC
GGTTACGTTG ACGTGTTTAA CTTAGCAACG AACAAAAGCA GTGACAAAGT TGGCGATCCA
AAAATCTTCA TGAAGTTTGC TCCACGTATG TCTCTGGATG CATTTACTGG CGTTGATATG
TCTTTCGGTC CAGTACAAGA AGTTTACGTT GCATCACTGT TCGAATGGGA TGGTACAGAT
TTTAAAACCA ACGCATTTTC TGTAAACAAC CAGAAAATTG GTCTTGGTTC TGATGTGATG
GTTCCATGGT TTGGCAAAGT TGGCCTGAAC CTATACGGTA CTTATGATGG CAACCGCAAA
GATTGGAACG GCTTCCAAAT CTCGACCAAC TGGTTTAAAC CTTTCTATTT CTTCGAGAAC
GGTTCATTCA TCTCTTACCA AGGTTATATC GATTACCAAT TCGGCCTTAA AGATGAATAC
TCGACAGCCA GCAACGGCGG TGCGATGTTT AACGGTATCT ACTGGCATTC AGATCGTTTC
GCTGTAGGCT ACGGTCTAAA AGGCTACAAA GACGTTTACG GAATCAAAGA TACCGATGGC
TTCAAGTCAA CAGGCTTTGG CCACTACGTA GCAGTAACTT ACAAGTTCTA A
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| Protein sequence | MRFLSLLCPP VERAAVMRPP YTTHLQRVPL MRKSLLALSL LAATSAPVLA ADYSDGDIHK
NDYKWMQFNL MGAFDELPGK SSHDYLEMEF GGRSGIFDLY GYVDVFNLAT NKSSDKVGDP
KIFMKFAPRM SLDAFTGVDM SFGPVQEVYV ASLFEWDGTD FKTNAFSVNN QKIGLGSDVM
VPWFGKVGLN LYGTYDGNRK DWNGFQISTN WFKPFYFFEN GSFISYQGYI DYQFGLKDEY
STASNGGAMF NGIYWHSDRF AVGYGLKGYK DVYGIKDTDG FKSTGFGHYV AVTYKF
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