| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1891 |
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| Symbol | |
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| ID | 5136306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2009594 |
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| End bp | 2010178 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640533348 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001217815 |
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| Protein GI | 147673682 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAATC CATCACCTCA TACGTTTGGC CGCCAAGAGT GGCTAGAGTG TATGGAAAAA
GTTAAAAGCA GGGACACACA GGCTTTTGCT CTGGTATTTA GCTATTACTC GCCGAAATTG
AAGCAGTTTG TGATGAAGCA TGTCGGTAGT GAACAGGTAG CGTTGGAATT GGTTCAAGAA
ACCATGTCAA CCGTATGGCA AAAAGCTAGT CTGTTTGATG GGCAGAAAAG CTCTCTCGCG
ACTTGGATTT ACACCATAGC GCGTAACCTA AGTTATGACT TGTTACGTCG ACAAAAGGGG
CGTGACGCTT ATGTGTTGGC CGATGATATT TGGCCGGAAG ATTATTGTCC TCCTGATCTG
GTTGATCACT ACGCACCGGA ACAAGATCTG CTCAAAGAGC AGGTGATGAA ATTTCTCGAC
CGCCTGCCAG AAGCACAGCA GCAAGTGATC AAAGCGGTCT ATTTAGAAGA AATCCCCCAG
CAAGATGTGG CCGATATGCT CGACATTCCA CTCGGCACTG TGAAATCACG TCTACGTCTT
GCGGTAGAAA AGTTAAGATT ATCAATGGAT GCGGAGTCCT TATGA
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| Protein sequence | MFNPSPHTFG RQEWLECMEK VKSRDTQAFA LVFSYYSPKL KQFVMKHVGS EQVALELVQE
TMSTVWQKAS LFDGQKSSLA TWIYTIARNL SYDLLRRQKG RDAYVLADDI WPEDYCPPDL
VDHYAPEQDL LKEQVMKFLD RLPEAQQQVI KAVYLEEIPQ QDVADMLDIP LGTVKSRLRL
AVEKLRLSMD AESL
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