| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1816 |
|---|
| Symbol | |
|---|
| ID | 5136024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1930203 |
|---|
| End bp | 1931225 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640533273 |
|---|
| Product | pseudouridine synthase family 1 protein |
|---|
| Protein accession | YP_001217740 |
|---|
| Protein GI | 147674574 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTGCACCA TCCGTTGTGA AACGTTAGGA GATTGTATGT CCCAACCGAC TGAAAAACGC
CTCAATAAAT TCATCAGTGA GACGGGCTAT TGCTCACGCC GTGAAGCCGA CAAGCTGATT
GAGCAAGGGC GAGTAACTCT CAATGGCCTA CAGCCAGAAG TCGGAAGCAA AGTCACCGAG
CAAGATGAAG TCTGTATTGA CGGTAAGCCT CTGCGTAGCA AAGAGCGTCC AATTTATATT
GCTTTAAACA AACCCACTGG CATTACTTGT ACGACGGAAC GTGATGTTCC GGGAAATATC
GTTGATTTCA TTGGTCACCA CAAACGTATT TTCCCAATAG GTCGTTTAGA TAAGCCGTCT
GATGGCCTGA TTTTTCTGAC CAATGATGGC GATATCGTGA ATAAGATCCT GCGTGCGGGA
AATAACCACG AAAAAGAGTA CGTGGTTCGA GTCGATAAAC CCATTACGCC TGAATTTATC
CGTCAAATGT CTTCTGGGGT AAACATCCTC GATACGGTAA CTCTGCCCTG CAAAGTGACT
CAAGAGACGC AATATTCATT TCGTATTGTG CTGACTCAGG GACTGAACCG CCAAATTCGT
CGCATGTGTG AAGCCTTGGG ATATGAAGTG TTTAAACTGC GACGCGTGCG GATCATGAAC
ATCACGCTAG ATGGCATTCC AAACGGTAAA TGGCGTTATT TAAGCGAAGC GGAAGTGAGC
GAGATTCTGG CTATGTGTGA AGACTCCAGC GGTACAGAAG AAGCCTCACG AGTCGCGCAA
AGTGGTGACA CGATTAAACG TGCGACCGAT GCCAAGCTAT TTGATAGCCG TGAAGCCAAC
AAAGAATCCA AAGCGCGCCG TAACCCCAAA ACCTACCATG GTAAAAATGC ACAAGAGTTT
CGCCATGCGC CAAATTCGAA AAAAGCGCAG CGTCGTCCGT CTAGCCCATC ATCCAATACA
GCCTCAGGCT CAAAGCCAAC ACCGCGCACC GGTGGCACTT TAAGCCTCAG AAAATCGAAA
TAA
|
|---|
| Protein sequence | MCTIRCETLG DCMSQPTEKR LNKFISETGY CSRREADKLI EQGRVTLNGL QPEVGSKVTE
QDEVCIDGKP LRSKERPIYI ALNKPTGITC TTERDVPGNI VDFIGHHKRI FPIGRLDKPS
DGLIFLTNDG DIVNKILRAG NNHEKEYVVR VDKPITPEFI RQMSSGVNIL DTVTLPCKVT
QETQYSFRIV LTQGLNRQIR RMCEALGYEV FKLRRVRIMN ITLDGIPNGK WRYLSEAEVS
EILAMCEDSS GTEEASRVAQ SGDTIKRATD AKLFDSREAN KESKARRNPK TYHGKNAQEF
RHAPNSKKAQ RRPSSPSSNT ASGSKPTPRT GGTLSLRKSK
|
|---|
| |