| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1803 |
|---|
| Symbol | viuA |
|---|
| ID | 5136356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1915366 |
|---|
| End bp | 1917429 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640533260 |
|---|
| Product | ferric vibriobactin receptor |
|---|
| Protein accession | YP_001217728 |
|---|
| Protein GI | 147675048 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTT TATGCCCAGC GCGAGTCAGT GTTGCAGAGA ACAAAAAGTT TAAATTGCAC
ACCTTGTCGG CGATGATGAT GGGGCTTTTC ACGGGCAGTT TTGCCTATGC GGAAACGCAG
AATACGAGTA ATCAAGAGCA AGAAATGCCC GTGTTGGTCG TGATTGGCGA AAAAACACAA
CGCAGCATTT ATGAGACGAG CGCGAGTGTC GAAGTGTTTG ATCAAGACAC GATTGAGAGA
ACACCCGGCG CAACAGAGAT TGATGATCTC CTACAACTGA TCCCAAACCT TGTCGATTCG
GGTCAAAGCA ACAATATGCC CACGATTCGA GGTATCGATG GCTCGGGGCC TTCCGTTGGG
GGCTTGGCCA GTTTTGCTGG CACATCACCT CGCTTAAATA TGTCGATTGA CGGTCGTTCG
CTGACTTATT CTGAAATTGC TTTTGGCCCT CGTTCACTCT GGGATATGCA GCAAGTGGAG
ATCTATTTAG GGCCACAGAG CTACATTCAA GGGCGAAATA CCTCGGCGGG CGCGATTGTG
ATGAAGTCTA ACGACCCTAC TCATCATTTT GAAAGTGCGG TAAAAGCAGG TATTGGCGAA
AGCGATTATT CGCAAACAGC GGGTATGATC TCTGCACCTA TTATTCAAGA TGAGTTGGCA
TTTCGTTTGA GTTTTGATCA GCAGAAGCGG GATAGTTTTG TCGATCTTGC TGCTTTTGAA
CCCGCGGGCG ATCCTAAAAA AATCGAGATG AATTCGGTGC GCGGTAAGCT GCTGTACGAA
CCTTCCGCAC TGGATGGTTT TAAAACCACG TTAACGCTCT CTCATATGGA TTCTCGTGGG
CCACAAACAG AAAACATTAA TGTGGCGGGT AACGAAGCCT TCCGACCGGT TTATGAGACA
GCCTCGTTCA CGACGGCGTG GGATATTATC TGGCATCTCA ACGACCTCTT CACTTTTGAA
AACAATCTGG TGTATGCCGA TTTCAGCTAT GACCGTTATA CCAATCCCAA TAGCCGAGGG
GATTTCAATA CCGATGGTAA AGAATTCCAT ATCGAACCGT TATTACGCTA TATCGCACTG
GATGGTAGCG TGAATACGCT GATTGGGGCG CGTTACTACC AATCTTCACA GGATGATATG
TACATTGATG CGGCCAGTGC ATATCCGATG GATGGTCGCA CTAAAGCCAA ATCCGTTTTT
GCGGAAGTCA CTTATGCGTT AACGCCTTCT ATCAATGTGA ATTTGGCTGG CCGATTTGAA
AGAGAGCAGG TTAAGCGAAA CGTCTCGCAC CCAAGATACA AGCTTGATTA CGATGAAACA
TCCAGCGTAT TTTTGCCTAA GCTCGATGTG GCATATACAC CAGTGCAAGG GCAGACCTAT
GGGATTAAAG CGGCTAAAGG TTACAATGCG AGTGGGGCAG GACTAGCCTT TAACTCGATG
CAATTTACAG GTTTTAGGCC CTACGAGTTT GAACAGGAAT CGATTTGGAA CTATGAGTTT
TACACCCGTC ACCGTTTCAG CCATTCTGTC GAAGTGTTGA CTAACCTTTT CTATAACGAT
TTTGACAGTA TGCAGATGAC GCAAACCACA TCCAGTGGTG ATGTGTTTAT CGCTAACCTT
GATGAAGCGA GCACTTACGG CGCTGAAATC GGATCACGTT GGTATGCGAC CTCTTCACTC
GAACTTTTTG CCAACCTAGG GCTTTTGAAA ACCGAGTTCA AAGAAACCAC CGGAAACACC
AAAGAGCTGC CTCGAGCACC GAAAATGTCA GCCAATGTTG GTCTGCTTTA TGATTTTGGC
CAAGGGTTTG AGTTCAGTAG TAATGCGGCT TATACCGGAA GCTATTTCTC GGAGAGTGGC
AATTCAGAAA AATTTGCGAT TGACTCATAT TGGGTTGCCA ATGCTCAGTT AGCCTATGTT
TTTGAGCATG GACGAGCAAC CTTGTATGCC ACTAACTTAT TGGATTCTGA TAAAACAACG
CTTTATCTCT CAACCAATAA TACGCTTGAC CAACTTAAAC AGCAGCCTCG CATGATTGGT
GCATCGGTGC AGTTGAATTT CTAA
|
|---|
| Protein sequence | MAVLCPARVS VAENKKFKLH TLSAMMMGLF TGSFAYAETQ NTSNQEQEMP VLVVIGEKTQ
RSIYETSASV EVFDQDTIER TPGATEIDDL LQLIPNLVDS GQSNNMPTIR GIDGSGPSVG
GLASFAGTSP RLNMSIDGRS LTYSEIAFGP RSLWDMQQVE IYLGPQSYIQ GRNTSAGAIV
MKSNDPTHHF ESAVKAGIGE SDYSQTAGMI SAPIIQDELA FRLSFDQQKR DSFVDLAAFE
PAGDPKKIEM NSVRGKLLYE PSALDGFKTT LTLSHMDSRG PQTENINVAG NEAFRPVYET
ASFTTAWDII WHLNDLFTFE NNLVYADFSY DRYTNPNSRG DFNTDGKEFH IEPLLRYIAL
DGSVNTLIGA RYYQSSQDDM YIDAASAYPM DGRTKAKSVF AEVTYALTPS INVNLAGRFE
REQVKRNVSH PRYKLDYDET SSVFLPKLDV AYTPVQGQTY GIKAAKGYNA SGAGLAFNSM
QFTGFRPYEF EQESIWNYEF YTRHRFSHSV EVLTNLFYND FDSMQMTQTT SSGDVFIANL
DEASTYGAEI GSRWYATSSL ELFANLGLLK TEFKETTGNT KELPRAPKMS ANVGLLYDFG
QGFEFSSNAA YTGSYFSESG NSEKFAIDSY WVANAQLAYV FEHGRATLYA TNLLDSDKTT
LYLSTNNTLD QLKQQPRMIG ASVQLNF
|
|---|
| |