Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1654 |
Symbol | fliA |
ID | 5135514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1774273 |
End bp | 1775007 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640533111 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_001217593 |
Protein GI | 147674794 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0000445498 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATAAAG CGCTTACATA CGATCAATAC GGAAATCTTA ATAGCCAGCA GCTATTTCTT GAGAAGTACT CTGTATTGGT TAAGCGTATC GCTCATCATT TGATTGGTCG TCTTCCGCCC AGTGTTCTGA TCGAAGACCT CATTCAAGCT GGCATGGTTG GTTTGCTTGA GGCACAAAAA AATTATGATG GAAGTAAAGG CGCGAGCTTT GAAACCTATG CCGGAATTCG GATTCGTGGG GCTATGCTCG ACGATATCCG ACGTGGTGAC TGGGTTCCGC GATCTGTGCA CAAACATAAT CGGGAAATCA GTCAAGCGAT TGCAGTGCTC GAGGGAGAAC TCAATCGCGA TCCAACGGAT GCTGAAGTGG CGAAGTTTTT AAACATGTCA CTAGAGCAGT ATCACAGCGT GCTGATGGAC ATTAACTGTT CACGTATTGT TGGGATAGAG GATCTCGGTG TTTCTGACGA CGCGATTTCA CCGTTTGAAG AGGGGGAAGA TAACTCGCCT TTTCACGGTG TCGCTGAAGA ATCTTTCCGT AAAGCACTCG TTGAATCAAT AAAATCGCTC CCGGAGCGTG AAGCTTTGGT ACTTTCGCTC TATTATGATG AAGAGCTAAA CTTAAAAGAA ATTGGTGAGG TACTTGGAGT TAGTGAATCT CGCGTCAGCC AGATACTCAG CCAATCTATG CAGCGGCTAA GAACAAAGTT AAGTTCTTGG ACTCGGAATG ACTAA
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Protein sequence | MNKALTYDQY GNLNSQQLFL EKYSVLVKRI AHHLIGRLPP SVLIEDLIQA GMVGLLEAQK NYDGSKGASF ETYAGIRIRG AMLDDIRRGD WVPRSVHKHN REISQAIAVL EGELNRDPTD AEVAKFLNMS LEQYHSVLMD INCSRIVGIE DLGVSDDAIS PFEEGEDNSP FHGVAEESFR KALVESIKSL PEREALVLSL YYDEELNLKE IGEVLGVSES RVSQILSQSM QRLRTKLSSW TRND
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