Gene VC0395_A1630 details

Gene Information

• Locus tag: VC0395_A1630
• Symbol: topB
• ID: 5136102
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1753670
• End bp: 1755613
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640533087
• Product: DNA topoisomerase III
• Protein accession: YP_001217569
• Protein GI: 147675446
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000000168302
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCGGT TATTTATTGC AGAAAAACCT AGCCTTGCGC GAGCGATTGC CGATGCACTA 
CCCAAGCCTC ATAAAAAAGA ACAAGGGTGT ATTCGCTGCG CTAATGGCGA TATCGTGACT 
TGGTGCATTG GTCACCTTCT CGAACAAGTC GAGCCAGACG CTTATGATGA GCGATACAAA 
AAGTGGAATA TGGCGGATTT GCCTATCATT CCAGAGCAGT GGCAACTGCG CCCAAGAAAA 
TCCTCCTCTC AACAGCTCAC CGTCGTTCGT AAGCTACTCA AAGAAGCAAC GCAGATTATC 
CATGCCGGTG ACCCCGATCG CGAAGGGCAA CTGTTGGTGG ATGAGGTGAT CGATTATTGC 
AAAGTGCCGA AGAGCAAAAA AGAAACCGTG CAGCGCCTTT TGATCAGTGA TTTAAACCTT 
TCTGCAGTCA AGCGTGCCTT ACAAGGCTTG CGCAGTAATC GAGAGTTTAT TCCACTCTCT 
GTTTCGGCTT TAGCGCGTTC ACGCGCTGAC TGGCTGTATG GTATGAATAT GTCTCGAGCT 
TATACCCTGC TTGGGAAAAA AGCCGGTTAT CAAGGCGTGC TCTCCGTAGG GCGAGTACAG 
ACGCCAGTAC TGGGTTTAGT GGTGCGACGG GATGAAGAGA TCGAACATTT TATCCCGCAT 
GATTATTTTA CTCTTGATGC TTTAATTCCA TACCAAAATG GCACCGAATA CTTCGACATA 
CGTGCCCGTT GGAAACCAAG TGAGGCCTGC TTACCTTGGC AAGATGAAGA AGGGCGGGTC 
ACTAACCGTA AATTGGTGGA CAATGTTGCC AGTCGCATTG CGAATCAGCC CGCGACTGTG 
ACTGAATCAG AGCAAGATCA AACCAAGCAA GCGGCCCCTT TGCCCTATTC ACTTTCAGCG 
CTGCAAATTG ATGCGGCAAA ACGGTATAAC TTCAGCGCAC AACAAGTGTT GGATCTGTGC 
CAGTCTCTTT ATGAAAAGCA TAAATTGATC ACTTATCCGC GATCTGATTG CCGATACTTA 
CCGAAAGAGC ATTTAGCTCA GGCTCCCGAC GTGGTAGCGG CAATAGCCAA CAATGCGCAA 
GAGATGGTCA CCGCAGTGAA TGATGCGGAT TTATCACTAC GCTCCAAAGC GTGGAATGAC 
AGTAAAGTCG ACGCGCACCA CGCCATCATT CCAACGCCGA AGAAAGCGTC GGTTAATGCG 
CTGTCAGGGC ATGAAATGAA AGTCTATCAA CTGATTGCGC GTCAGTACCT TATGCAATTT 
TATCCTGCGG CGATTTATGC AGAAGCCAAA CTGGTTTTTA ACATCGCTGG CGGCATTTTT 
ATTGCCAAAG GGCGTCAACT GCTCAGTGCT GGATGGAAAG TGTTGACCGG TCAGCAAGAT 
GAGCAAGAAG AGTGCGTGGA TAAAGTCCCC CCTTTGCCTG TTGGCATTGT GCTGCAGTGT 
CGAGAAGGGG AAATAAAACA GAGACAAACC GAGCCGCCAC GCCATTTTAC GGAAGCTACA 
TTACTGCAGG CGATGACGGG GATTGCCCGT TTCGTGGCCG ATAAAGAGCT GAAAAAAATT 
CTGCGTGAGA CGGATGGTTT AGGCACTGAA GCCACACGAG CTGGGATCTT GGATACCTTG 
TTTAAGCGTG GATTACTGCA GCGTGATAAC AAGCTCATTA AAAGCACGCC AGCTGGCCGA 
GGTTTGATTC ATGCGTTACC CAGTGAAGCC ACCTATCCCG ATATGACGGC ACATTGGGAA 
CATCAACTGC AAGCGATCGC GGAAAAGGGG CAAGCTTATC AACCCTTTAT GCAGACACTA 
CAAGGCCGCC TCGAGCAGTT AATTGAGCAA GTTCAGGTCG CACCGGTTCC TGTATCATTG 
CAAGCTTTGC CAGCGGTGAG TAAACCTGCC TTTAAGCGCA CACGCCGTGC ACCAAAGAGT 
AAAGCCAGAA CGTATAAAGC TTAA 

 

Protein sequence

MTRLFIAEKP SLARAIADAL PKPHKKEQGC IRCANGDIVT WCIGHLLEQV EPDAYDERYK 
KWNMADLPII PEQWQLRPRK SSSQQLTVVR KLLKEATQII HAGDPDREGQ LLVDEVIDYC 
KVPKSKKETV QRLLISDLNL SAVKRALQGL RSNREFIPLS VSALARSRAD WLYGMNMSRA 
YTLLGKKAGY QGVLSVGRVQ TPVLGLVVRR DEEIEHFIPH DYFTLDALIP YQNGTEYFDI 
RARWKPSEAC LPWQDEEGRV TNRKLVDNVA SRIANQPATV TESEQDQTKQ AAPLPYSLSA 
LQIDAAKRYN FSAQQVLDLC QSLYEKHKLI TYPRSDCRYL PKEHLAQAPD VVAAIANNAQ 
EMVTAVNDAD LSLRSKAWND SKVDAHHAII PTPKKASVNA LSGHEMKVYQ LIARQYLMQF 
YPAAIYAEAK LVFNIAGGIF IAKGRQLLSA GWKVLTGQQD EQEECVDKVP PLPVGIVLQC 
REGEIKQRQT EPPRHFTEAT LLQAMTGIAR FVADKELKKI LRETDGLGTE ATRAGILDTL 
FKRGLLQRDN KLIKSTPAGR GLIHALPSEA TYPDMTAHWE HQLQAIAEKG QAYQPFMQTL 
QGRLEQLIEQ VQVAPVPVSL QALPAVSKPA FKRTRRAPKS KARTYKA