| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1615 |
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| Symbol | |
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| ID | 5135484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1734545 |
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| End bp | 1736611 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640533072 |
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| Product | ribonuclease E |
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| Protein accession | YP_001217556 |
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| Protein GI | 147674453 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000000120942 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATTA ACGCAACTCA AAAAGAAGAG TTGCGTGTCG CGTTGGTCGA TGGCCAACGT
CTGTTCGATC TGGATATTGA AAGTCCGGGG CACGAATCGA AAAAAGCAAA TATCTACAAA
GGCCGCATTA CCCGCATTGA ACCCAGTCTT GAAGCTGCAT TCGTTGACTA CGGTGCTGAA
AGACACGGTT TCCTCCCTCT CAAAGAAATC GCTCGTGAAT ACTTCCCTGA TGGTTATAGC
TACCAAGGTC GTCCAAACAT CAAAGATGTG CTGAACGAAG GTCAGGAAGT GATCGTGCAA
ATCGAGAAAG AGGAGCGCGG TAGCAAAGGT GCAGCCCTAA CCGCCTTTAT CTCTCTAGCG
GGCAGCTACT TAGTTCTGAT GCCAAATAAC CCTCGTGCTG GCGGTATTTC TCGTCGTATC
GAAGGCGATG AGCGCACTGA ACTGAAATCA GCACTCAGCT CACTAGAATT GCCACAAGGT
ATGGGCTTAA TTGTTCGTAC CGCAGGCGTA GGTAAAAGCG CTGAAGAGCT AGAGTGGGAC
TTAAATGTAC TGCTTAAGCA CTGGAGTGCG ATTAAACAAG CGTCTGATTC AAACCCTGCA
CCTTTCCTTA TCCACCAAGA AAGTAACGTG ATTGTTCGTG CGATCCGTGA TTACTTGCGT
CGTGATATTG GTGAAATTCT TATCGACAGC AACAGCATTT ACGAGCGTGC TCTTGAGCAT
ATCCGTTTAG TGCGCCCAGA TTTCGTCAAT CGTGTGAAAA AATACGAAGG CGAAGTACCG
CTGTTCAGCC ATTTCCAAAT CGAAAGCCAG ATTGAATCGG CTTTCCAACG TGAAGTTCGC
CTGCCTTCTG GTGGTTCAAT CGTTATTGAC CCAACCGAAG CCTTGACTTC CATCGACATC
AACTCTGCTC GCGCAACCAA AGGTGGCGAT ATTGAAGAGA CCGCTCTCAA TACCAACCTA
GAAGCTGCAG ATGAAATCGC ACGCCAATTG CGTCTGCGTG ACCTCGGTGG TCTTGTGGTG
ATCGACTTCA TCGATATGAC CCCTGTTCGC CACCAGCGTG AAGTGGAAAA CCGTCTACGT
GAAGCGGTGC GTGTTGACCG TGCTCGCGTT CAAATTGGCC GTATTTCTCG CTTTGGTTTG
CTGGAGATGT CGCGTCAACG TTTGAGCCCT TCTCTGGCAG AAGCAAGCCA TCACATCTGT
CCTCGTTGTA AAGGAACCGG CGTGATTCGT GACAACGAAT CTTTGGCACT TTCTGTTCTG
CGCTTAATTG AAGAAGAAGC ACTCAAAGAC AACACATCGC AAGTGCTTGC GGTGGTACCT
GTCTCTATCG CGTCTTATCT GTTAAACGAG AAGCGTCGCT CAATCAATCA CATTGAAAAA
GCGCAGCAAG TTCGCATTAC TATCGTGCCA AATTCCGATA TGGAAACACC GCACTTTGAA
GTGATCCGCG TGCGTGAAGG TGAAGAGCAA GATGTTCTCT CTTACCTGAT TCCGAAAAAG
CTGGAAGCGA TGAAAGAAGC GGAAGGCAAA GAAGTGGTCG ATGTTGAGCT CAAACCAAAA
CGTATTGAAG AGCCAGTACT GAAAGGTTTT GCAGCGCCTG CGGAAGCGGT TCCTGCTCCA
ACACCAAAAC CTAAAGCAGA ACCTCAACCT GTTGCAGAGG TACAGCAACC TGCGCAGCCT
GGTTTCTTTA GCCGTGTGTT TAAAGCGATT GCGAGCCTAT TCTCTGCGAC ACCGGAAGCG
GCCAAAGTAG AAGCGCCTGT AACGCAGAAT AGTGAACAAG ACAAACCTCG TCGTGAACGT
AACGATCGTA ATAATGATCG TCGTCGTAAC CCTCGTGACA AAAACCGTCG CCGCGGTAAT
GAGGAAAACA ACGAGCGTAA CGATAAAGAG ACATCAAACA GCAACCGTAA GCCACAAGAG
CGCAAGCCAA AGCAAGAGCG TGGTGAGCGT AACGAACGTA ATGACCGCAA TGAACGTCCA
GAAACCGAGC GTCCAGAACG TCAAATCGTC GTAATAAACG AGATGAAAGT AAAACGGCTA
AATTGCTTGA GCAAGGTCGC CAATTAG
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| Protein sequence | MLINATQKEE LRVALVDGQR LFDLDIESPG HESKKANIYK GRITRIEPSL EAAFVDYGAE
RHGFLPLKEI AREYFPDGYS YQGRPNIKDV LNEGQEVIVQ IEKEERGSKG AALTAFISLA
GSYLVLMPNN PRAGGISRRI EGDERTELKS ALSSLELPQG MGLIVRTAGV GKSAEELEWD
LNVLLKHWSA IKQASDSNPA PFLIHQESNV IVRAIRDYLR RDIGEILIDS NSIYERALEH
IRLVRPDFVN RVKKYEGEVP LFSHFQIESQ IESAFQREVR LPSGGSIVID PTEALTSIDI
NSARATKGGD IEETALNTNL EAADEIARQL RLRDLGGLVV IDFIDMTPVR HQREVENRLR
EAVRVDRARV QIGRISRFGL LEMSRQRLSP SLAEASHHIC PRCKGTGVIR DNESLALSVL
RLIEEEALKD NTSQVLAVVP VSIASYLLNE KRRSINHIEK AQQVRITIVP NSDMETPHFE
VIRVREGEEQ DVLSYLIPKK LEAMKEAEGK EVVDVELKPK RIEEPVLKGF AAPAEAVPAP
TPKPKAEPQP VAEVQQPAQP GFFSRVFKAI ASLFSATPEA AKVEAPVTQN SEQDKPRRER
NDRNNDRRRN PRDKNRRRGN EENNERNDKE TSNSNRKPQE RKPKQERGER NERNDRNERP
ETERPERQIV VINEMKVKRL NCLSKVAN
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