| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1614 |
|---|
| Symbol | rluC |
|---|
| ID | 5136782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1732977 |
|---|
| End bp | 1733924 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640533071 |
|---|
| Product | ribosomal large subunit pseudouridine synthase C |
|---|
| Protein accession | YP_001217555 |
|---|
| Protein GI | 147673109 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000000109224 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA TCAGAACTCA AGTCCAGTTC ATCGACATTG ATGAAGACAT GGCTGGTCAG
CGCATTGATA ATTTTTTGCG CAACCAATTA AAAAATATTC CCAAAAGCGT GGTTTATCGA
ATTCTACGTA AGGGAGAAGT GCGCGTGAAC AAAAAACGCG TAAAAGCAGA ATACAAGCTC
GAAGCGGGCG ATGTGGTGCG TGTGCCTCCC GTCACCGTGG AAGTCAAAGA GAACGAGCCT
GCTCCACCGA GTACCAAACT CAGTAAAGTG GCGGAATTAG AACACTGTAT TGTCTATGAA
GACGATCATT TACTCATCCT CAATAAACCG TCAGGTACGG CAGTGCATGG TGGGAGCGGT
TTACACTTTG GTGCCATTGA AGCCTTGCGC GCCCTGCGCC CCCAAGCGCG TTTTCTTGAG
TTAGTACACC GTATTGACCG TGATACCTCA GGGATTTTGC TGGTGGCCAA AAAACGCTCG
GCACTGCGCC ACTTACAAGC TCAGTTTCGC GAGAAAACGG TGCAGAAGTA CTACTACGCT
TTAGTCATGG GACATTGGGA TGCAGAGTGT AAAGTGGTCA ATGCGCCGTT GCTGAAAAAT
GAAGTCAACA GCATAGTGCG CGTGAACCCC AACGGTAAGC CGTCGGAAAC CCGATTCCGT
ATTCTTGAGA AGTTTGCTGA AGCGACGTTA GTTCAAGCGA GCCCTGTGAC TGGGCGTACG
CACCAAATTC GTGTACACAC TCAGTACATG GGGCATCCAA TCGCGTGGGA TGATCGTTAT
GGTGATCGCC GCTTTGATGC TTATACAGCG CAATTTGGGA TTGAGCGCCT GTTTTTGCAT
GCGGCAAACA TCCAATTTGT GCATCCTGCC AGCGAGAAAA AGTTGGAAAT CCATGCGCCA
CTCGAAGCGC ATTTGGAGCA AGCTCTGACA AAAATGCGTC AGGCTTAA
|
|---|
| Protein sequence | MNEIRTQVQF IDIDEDMAGQ RIDNFLRNQL KNIPKSVVYR ILRKGEVRVN KKRVKAEYKL
EAGDVVRVPP VTVEVKENEP APPSTKLSKV AELEHCIVYE DDHLLILNKP SGTAVHGGSG
LHFGAIEALR ALRPQARFLE LVHRIDRDTS GILLVAKKRS ALRHLQAQFR EKTVQKYYYA
LVMGHWDAEC KVVNAPLLKN EVNSIVRVNP NGKPSETRFR ILEKFAEATL VQASPVTGRT
HQIRVHTQYM GHPIAWDDRY GDRRFDAYTA QFGIERLFLH AANIQFVHPA SEKKLEIHAP
LEAHLEQALT KMRQA
|
|---|
| |